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Commits on Dec 10, 2020

• updated prep scripts

  gpertea

  committed
  f8ecf1c

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• added prepDE.py3

  gpertea

  committed
  d38ae66

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Commits on Nov 5, 2020

• Update README.md

  gpertea

  authored
  095eee9

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Commits on Sep 19, 2020

• fixed GFastaIndex bug

  gpertea

  committed
  bed40f3

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Commits on Aug 25, 2020

• GBase ver adjust

  gpertea

  committed
  27957fd

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• predefine GIntHash in GHashMap.hh

  gpertea

  committed
  4224d67

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• sync gff.cpp

  gpertea

  committed
  2e55b83

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• remove fseeko/ftello

  gpertea

  committed
  84467ca

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• shorten sleep duration while waiting for threads

  gpertea

  committed
  bd2cd4b

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• Cygwin build works, tested

  gpertea

  committed
  31c7c0c

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• builds with mingw64/msys

  gpertea

  committed
  d6dabc4

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Commits on Aug 24, 2020

• strcasecmp fix for cygwin

  gpertea

  committed
  f2d36c4

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• adding xxhash.h

  gpertea

  committed
  4b610cc

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• remove city hash

  gpertea

  committed
  a3a6c9b

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Commits on Aug 23, 2020

• GHashMap using xxHash64 by default

  gpertea

  committed
  db37743

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• sh

  gpertea

  committed
  9de60c9

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• simpler GIntHash alias

  gpertea

  committed
  1429a1b

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• builds and passes tests with new GHashMap.hh

  gpertea

  committed
  f0d78fe

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Commits on Jul 7, 2020

• fixed compatiblity between long transfrag and path assembled so far (onpath_long)

  

  Mihaela Pertea

  committed
  ddb3e17

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• small bug fix in computing long read assemblies (get_trf_long)

  

  Mihaela Pertea

  committed
  7583bd3

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Commits on Jul 6, 2020

• fixed infinte loop for eonly case, and updated to 2.1.4

  

  Mihaela Pertea

  committed
  97b110b

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Commits on Jun 8, 2020

• adjusted GBamWriter to allow avoid destruction of the header

  gpertea

  committed
  4648e24

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Commits on May 30, 2020

• minor GVec adjustments

  gpertea

  committed
  b44ee90

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Commits on May 16, 2020

• patch version

  gpertea

  committed
  490ef38

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• fix --merge refseq comparison bug

  gpertea

  committed
  78fa67a

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Commits on May 13, 2020

• Merge branch 'master' of github.com:gpertea/stringtie

  

  Mihaela Pertea

  committed
  16ec4cb

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• fixed option -E

  

  Mihaela Pertea

  committed
  b0bfa81

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Commits on May 12, 2020

• fixed --viral description typo

  gpertea

  committed
  ea53e25

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• fixed --viral description typo

  gpertea

  committed
  68f7675

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• minor usage message reformatting

  gpertea

  committed
  8f43fad

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• Merge branch 'master' of github.com:gpertea/stringtie

  gpertea

  committed
  4e8bd7b

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• GBase sync

  gpertea

  committed
  0894f27

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• more bug fixes in version 2.1.3: NULL pointer access, and longread parses

  

  Mihaela Pertea

  committed
  22ee029

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• fixed eonly for longreads; viral option; several other bug fixes

  

  Mihaela Pertea

  committed
  dca40e4

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Commits on Apr 27, 2020

• fix ref order bug for multiple BAM input files

  gpertea

  committed
  c352594

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