minor fix (currgroup set to lastgroup)

gpertea · gpertea · commit 3fa0a662949b · 2019-05-17T12:23:47.000-04:00
diff --git a/rlink.cpp b/rlink.cpp
@@ -802,7 +802,10 @@ int merge_read_to_group(int n,int np, int p, float readcov, int sno,int readcol,
 				if(i<readlist[n]->juncs.Count()) {
 					if(!readlist[n]->juncs[i]->strand) { // check first exon
 						// see if first exon is big enough
-						if(!i || !readlist[n]->juncs[i-1]->strand) keep=false;
+						if(!i || !readlist[n]->juncs[i-1]->strand) {
+							keep=false;
+							if(!i && lastgroup) currgroup=lastgroup;
+						}
 					}
 				}
 				else if(readlist[n]->juncs.Count()){ // this is last exon
@@ -14399,4 +14402,3 @@ int printResults(BundleData* bundleData,int geneno, GStr& refname) {
 	//rc_write_counts(refname.chars(), *bundleData);
 	return(geneno);
 }
-

Original file line number	Diff line number	Diff line change
`@@ -802,7 +802,10 @@ int merge_read_to_group(int n,int np, int p, float readcov, int sno,int readcol,`
`802`	`802`	`if(i<readlist[n]->juncs.Count()) {`
`803`	`803`	`if(!readlist[n]->juncs[i]->strand) { // check first exon`
`804`	`804`	`// see if first exon is big enough`
`805`		`- if(!i \|\| !readlist[n]->juncs[i-1]->strand) keep=false;`
	`805`	`+ if(!i \|\| !readlist[n]->juncs[i-1]->strand) {`
	`806`	`+ keep=false;`
	`807`	`+ if(!i && lastgroup) currgroup=lastgroup;`
	`808`	`+ }`
`806`	`809`	`}`
`807`	`810`	`}`
`808`	`811`	`else if(readlist[n]->juncs.Count()){ // this is last exon`
`@@ -14399,4 +14402,3 @@ int printResults(BundleData* bundleData,int geneno, GStr& refname) {`
`14399`	`14402`	`//rc_write_counts(refname.chars(), *bundleData);`
`14400`	`14403`	`return(geneno);`
`14401`	`14404`	`}`
`14402`		`-`