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Commits on Jun 20, 2022

• Update environment.yml

  amorehead

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• Update Zenodo links

  amorehead

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Commits on May 4, 2022

• Update the train/val/test_step to parse input batches from a single input list

  amorehead

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Commits on Mar 22, 2022

• Update README.md

  amorehead

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Commits on Mar 4, 2022

• Update DeepInteract overview figure with small revisions

  amorehead

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Commits on Feb 26, 2022

• Update README.md

  amorehead

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• Update to version 1.1.0 of DeepInteract and update Zenodo links

  amorehead

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• Add DB5 dataset support to pipeline

  amorehead

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Commits on Feb 5, 2022

• Update README

  amorehead

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Commits on Jan 20, 2022

• Add new release details

  amorehead

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• Add correction to edge weights definition

  amorehead

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Commits on Dec 21, 2021

• Update README wording

  amorehead

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  bef7eea

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• Update Zenodo links w.r.t. new dataset version

  amorehead

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  f9c2ad1

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• Update figures

  amorehead

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• Include top-k recall metrics in training pipeline, and bump version

  amorehead

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Commits on Nov 14, 2021

• Add multimer support in feature postprocessing and update variable name

  amorehead

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Commits on Nov 2, 2021

• Halt execution of the inference pipeline if either input PDB is not found

  amorehead

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  d246f86

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• Install missing chain IDs into input PDB files

  amorehead

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• Restore original chain IDs to EVCoupling input chain DataFrames

  amorehead

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• Ensure PDB codes match for input pairs

  amorehead

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• Resolve potential misordering of PSAIA feature DF filenames

  amorehead

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Commits on Nov 1, 2021

• Add BioPandas to facilitate recovery of any missing PDB chain IDs during inference

  amorehead

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• Remove the deprecated use_dgl argument and its accompanying logic

  amorehead

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• Fix 'complex.dill file path not found' error

  amorehead

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Commits on Oct 29, 2021

• Merge pull request #5 from BioinfoMachineLearning/develop

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  amorehead

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• Simplify logging for feature imputation script

  amorehead

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• Add more logging to feature imputation function

  amorehead

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• Merge branch 'develop' of https://github.com/BioinfoMachineLearning/DeepInteract into develop

  amorehead

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• Fix pair filenames missing l/r_u substring not being processed, and also fix duplicate function name error for imputation function

  amorehead

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Commits on Oct 28, 2021

• Merge pull request #4 from BioinfoMachineLearning/develop

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  amorehead

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• Simplify filename matching during final stages of inference data processing

  amorehead

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• Match produced filenames with input filenames using their PDB codes

  amorehead

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Commits on Oct 27, 2021

• Merge pull request #3 from BioinfoMachineLearning/develop

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  amorehead

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• Scan directory of postprocessed pairs to determine how to construct input pair filepaths

  amorehead

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• Add logic to construct filepaths for already-postprocessed input pairs during Docker model inference

  amorehead

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