bug fix for an index out of range error in v1.3.1

gpertea · gpertea · commit 35c1ff263316 · 2016-11-15T07:39:00.000-05:00
diff --git a/rlink.cpp b/rlink.cpp
@@ -12235,7 +12235,7 @@ int build_graphs(BundleData* bdata) {
 				if(idx<0) guideedge.Add(ge1);
 				else if(guideedge[idx].endval>guides[g]->exons[0]->end) guideedge[idx].endval=guides[g]->exons[0]->end;
 				GEdge ge2(guides[g]->end,guides[g]->exons.Last()->start,s);
-				idx=guideedge.IndexOf(ge1);
+				idx=guideedge.IndexOf(ge2);
 				if(idx<0) guideedge.Add(ge2);
 				else if(guideedge[idx].endval<guides[g]->exons.Last()->start) guideedge[idx].endval=guides[g]->exons.Last()->start;
 			}
diff --git a/stringtie.cpp b/stringtie.cpp
@@ -11,7 +11,7 @@
 #include "proc_mem.h"
 #endif
 
-#define VERSION "1.3.1"
+#define VERSION "1.3.1b"
 
 //#define DEBUGPRINT 1
 

Original file line number	Diff line number	Diff line change
`@@ -12235,7 +12235,7 @@ int build_graphs(BundleData* bdata) {`
`12235`	`12235`	`if(idx<0) guideedge.Add(ge1);`
`12236`	`12236`	`else if(guideedge[idx].endval>guides[g]->exons[0]->end) guideedge[idx].endval=guides[g]->exons[0]->end;`
`12237`	`12237`	`GEdge ge2(guides[g]->end,guides[g]->exons.Last()->start,s);`
`12238`		`- idx=guideedge.IndexOf(ge1);`
	`12238`	`+ idx=guideedge.IndexOf(ge2);`
`12239`	`12239`	`if(idx<0) guideedge.Add(ge2);`
`12240`	`12240`	`else if(guideedge[idx].endval<guides[g]->exons.Last()->start) guideedge[idx].endval=guides[g]->exons.Last()->start;`
`12241`	`12241`	`}`