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![alt text](https://img.shields.io/badge/License-MIT-blue.svg "MIT License")
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## StringTie - efficient transcript assembly and quantitation of RNA-Seq data
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## StringTie: efficient transcript assembly and quantitation of RNA-Seq data
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Stringtie employs efficient algorithms for transcript structure recovery and abundance estimation from bulk RNA-Seq reads aligned to a reference genome.
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It takes as input RNA-seq read alignments in coordinate-sorted SAM/BAM/CRAM format and produces a GTF output which consists of assembled
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It takes as input spliced alignments in coordinate-sorted SAM/BAM/CRAM format and produces a GTF output which consists of assembled
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transcript structures and their estimated expression levels (FPKM/TPM and base coverage values).
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For additional StringTie documentation and the latest official source and binary packages please refer to the official website: <https://ccb.jhu.edu/software/stringtie>

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