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Commits on Mar 20, 2026

• pin-grelu-pre-huggingface-migration (#53)

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  MuhammedHasan

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  Muhammed Hasan Celik

  authored
  4dc63ef

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Commits on Feb 5, 2026

• bug fix for no overlap and argument fix (#51)

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  MuhammedHasan

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  Muhammed Hasan Celik

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  6a18905

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Commits on Dec 25, 2025

• vep attributions (#49)

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  MuhammedHasan

  and

  Muhammed Hasan Celik

  authored
  fff776d

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Commits on Nov 27, 2025

• debugging-ci-docs-skip-ci (#47)

  MuhammedHasan

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Commits on Nov 20, 2025

• Model versioning (#46)

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  MuhammedHasan

  and

  Muhammed Hasan Celik

  authored
  dcc1552

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Commits on Nov 5, 2025

• single gpu enforce (#45)

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  MuhammedHasan

  and

  Muhammed Hasan Celik

  authored
  83a718d

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Commits on Oct 29, 2025

• Inference with custom model (#40)

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  avantikalal

  and

  Muhammed Hasan Celik

  authored
  eeb50eb

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Commits on Oct 27, 2025

• Update README.md

  avantikalal

  authored
  ae462c8

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• Add tutorials section to README

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  avantikalal

  authored
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• Add requirements section to README

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  avantikalal

  authored
  12467e3

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• attrs (#43)

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  MuhammedHasan

  and

  Muhammed Hasan Celik

  authored
  feae779

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Commits on Oct 24, 2025

• save init_borzoi False (#41)

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  avantikalal

  authored
  2e20018

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Commits on Oct 9, 2025

• Recursive seqlet calling (#29)

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  MuhammedHasan

  and

  Muhammed Hasan Celik

  authored
  b70959c

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Commits on Sep 17, 2025

• faster modisco for decima (#23)

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  MuhammedHasan

  and

  Muhammed Hasan Celik

  authored
  fc083a6

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Commits on Sep 15, 2025

• Finetune tutorial (#30)

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  avantikalal

  authored
  f9a5203

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Commits on Aug 28, 2025

• fix dependecies (#27)

  MuhammedHasan

  authored
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Commits on Aug 26, 2025

• bug fix for training (#25)

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  MuhammedHasan

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  Muhammed Hasan Celik

  authored
  328e33d

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• modisco (#22)

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  MuhammedHasan

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  Muhammed Hasan Celik

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  f2278a2

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Commits on Jul 25, 2025

• bug fix training and gene mask lightning model (#21)

  MuhammedHasan

  authored
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Commits on Jul 22, 2025

• 0_3_0: cache prediction for the reference sequence to speed up predictions (#20)

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  MuhammedHasan

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  Muhammed Hasan Celik

  authored
  f1fc2f1

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Commits on Jul 21, 2025

• decima version=0.2.2, gene_expression prediction, sequence shifting and fine-tuning (#19)

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  3 peopleauthored
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Commits on Jul 8, 2025

• ensemble vep (#14)

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  MuhammedHasan

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  Muhammed Hasan Celik

  authored
  3dc14d7

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Commits on Jun 27, 2025

• Update setup.cfg

  avantikalal

  authored
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Commits on Jun 23, 2025

• setup trusted publisher workflow (#12)

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  jkanche

  authored
  3e0ebac

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Commits on Jun 18, 2025

• Restructure the package (#7)

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  3 peopleauthored
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Commits on May 1, 2025

• Update README.md

  avantikalal

  authored
  24c22bb

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Commits on Apr 22, 2025

• Fixes while running the tutorial (#4)

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  jkanche

  authored
  81b441f

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Commits on Apr 10, 2025

• Merge pull request #3 from Genentech/packaging

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  avantikalal

  authored
  6c01fea

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• default branch name is main

  jkanche

  committed
  e3fb3f9

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• Mock test for actions to pick it up

  jkanche

  committed
  447acda

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• packaging it up

  jkanche

  committed
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Commits on Apr 2, 2025

• Update README.md

  avantikalal

  authored
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Commits on Mar 31, 2025

• added variants

  

  lala8

  committed
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• updated tutorial to use zenodo files

  

  lala8

  committed
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Commits on Mar 20, 2025

• make borzoi init optional

  avantikalal

  committed
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