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prep.yaml
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name: prep
channels:
- bioconda
- conda-forge
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _r-mutex=1.0.1=anacondar_1
- _sysroot_linux-64_curr_repodata_hack=3=h69a702a_16
- agat=1.2.0=pl5321hdfd78af_0
- aria2=1.37.0=h347180d_1
- attrs=24.2.0=pyh71513ae_0
- aws-c-auth=0.7.16=h79b3bcb_6
- aws-c-cal=0.6.10=hb29e0c7_1
- aws-c-common=0.9.13=hd590300_0
- aws-c-compression=0.2.18=hecc5fa9_1
- aws-c-event-stream=0.4.2=hf9b2f7b_4
- aws-c-http=0.8.1=h5d7533a_5
- aws-c-io=0.14.5=h50678d4_1
- aws-c-mqtt=0.10.2=hf479d2b_4
- aws-c-s3=0.5.2=h4ad9680_0
- aws-c-sdkutils=0.1.15=hecc5fa9_1
- aws-checksums=0.1.18=hecc5fa9_1
- aws-crt-cpp=0.26.2=h19f5d62_7
- aws-sdk-cpp=1.11.267=h5606698_1
- bedtools=2.31.1=hf5e1c6e_2
- binutils_impl_linux-64=2.40=ha1999f0_7
- bio=1.7.1=pyhdfd78af_0
- biopython=1.84=py312h9a8786e_0
- biothings_client=0.2.6=pyh7cba7a3_1
- brotli-python=1.1.0=py312h2ec8cdc_2
- bwidget=1.9.14=ha770c72_1
- bzip2=1.0.8=h4bc722e_7
- c-ares=1.32.3=h4bc722e_0
- ca-certificates=2024.8.30=hbcca054_0
- cachetools=5.4.0=pyhd8ed1ab_0
- cairo=1.18.0=h3faef2a_0
- cattrs=23.2.3=pyhd8ed1ab_0
- certifi=2024.8.30=pyhd8ed1ab_0
- cffi=1.17.0=py312h06ac9bb_1
- charset-normalizer=3.3.2=pyhd8ed1ab_0
- colorama=0.4.6=pyhd8ed1ab_0
- curl=8.8.0=he654da7_1
- emboss=6.6.0=h008e53c_10
- exceptiongroup=1.2.2=pyhd8ed1ab_0
- expat=2.6.2=h59595ed_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=h77eed37_3
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.12.1=h267a509_2
- fribidi=1.0.10=h36c2ea0_0
- frozendict=2.4.4=py312h66e93f0_1
- gawk=5.3.0=ha916aea_0
- gcc_impl_linux-64=14.1.0=h3c94d91_1
- gettext=0.22.5=he02047a_3
- gettext-tools=0.22.5=he02047a_3
- gffread=0.12.7=hdcf5f25_4
- gflags=2.2.2=h5888daf_1005
- gfortran_impl_linux-64=14.1.0=he4a1faa_1
- giflib=5.2.2=hd590300_0
- glog=0.7.1=hbabe93e_0
- gmp=6.3.0=hac33072_2
- gprofiler-official=1.0.0=py_0
- graphite2=1.3.13=h59595ed_1003
- gxx_impl_linux-64=14.1.0=h8d00ecb_1
- h2=4.1.0=pyhd8ed1ab_0
- harfbuzz=9.0.0=hfac3d4d_0
- hpack=4.0.0=pyh9f0ad1d_0
- htslib=1.21=h5efdd21_0
- hyperframe=6.0.1=pyhd8ed1ab_0
- icu=73.2=h59595ed_0
- idna=3.7=pyhd8ed1ab_0
- itsdangerous=2.2.0=pyhd8ed1ab_0
- joblib=1.4.2=pyhd8ed1ab_0
- kernel-headers_linux-64=3.10.0=he073ed8_18
- keyutils=1.6.1=h166bdaf_0
- krb5=1.21.3=h659f571_0
- ld_impl_linux-64=2.40=hf3520f5_7
- lerc=4.0.0=h27087fc_0
- libabseil=20240116.2=cxx17_he02047a_1
- libarrow=15.0.0=h5476b98_8_cpu
- libarrow-acero=15.0.0=h59595ed_8_cpu
- libarrow-dataset=15.0.0=h59595ed_8_cpu
- libarrow-flight=15.0.0=hc6145d9_8_cpu
- libarrow-flight-sql=15.0.0=h757c851_8_cpu
- libarrow-gandiva=15.0.0=hb016d2e_8_cpu
- libarrow-substrait=15.0.0=h757c851_8_cpu
- libasprintf=0.22.5=he8f35ee_3
- libasprintf-devel=0.22.5=he8f35ee_3
- libblas=3.9.0=24_linux64_openblas
- libbrotlicommon=1.1.0=hb9d3cd8_2
- libbrotlidec=1.1.0=hb9d3cd8_2
- libbrotlienc=1.1.0=hb9d3cd8_2
- libcblas=3.9.0=24_linux64_openblas
- libcrc32c=1.1.2=h9c3ff4c_0
- libcurl=8.8.0=hca28451_1
- libdb=6.2.32=h9c3ff4c_0
- libdeflate=1.20=hd590300_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=hd590300_2
- libevent=2.1.12=hf998b51_1
- libexpat=2.6.2=h59595ed_0
- libffi=3.4.2=h7f98852_5
- libgcc=14.1.0=h77fa898_1
- libgcc-devel_linux-64=14.1.0=h5d3d1c9_101
- libgcc-ng=14.1.0=h69a702a_1
- libgd=2.3.3=h119a65a_9
- libgettextpo=0.22.5=he02047a_3
- libgettextpo-devel=0.22.5=he02047a_3
- libgfortran=14.1.0=h69a702a_1
- libgfortran-ng=14.1.0=h69a702a_1
- libgfortran5=14.1.0=hc5f4f2c_1
- libglib=2.80.2=hf974151_0
- libgomp=14.1.0=h77fa898_1
- libgoogle-cloud=2.22.0=h9be4e54_1
- libgoogle-cloud-storage=2.22.0=hc7a4891_1
- libgrpc=1.62.2=h15f2491_0
- libharu=2.4.4=h267a509_0
- libiconv=1.17=hd590300_2
- libidn2=2.3.7=hd590300_0
- libjpeg-turbo=3.0.0=hd590300_1
- liblapack=3.9.0=24_linux64_openblas
- libllvm16=16.0.6=hb3ce162_3
- libnghttp2=1.58.0=h47da74e_1
- libnl=3.10.0=h4bc722e_0
- libnsl=2.0.1=hd590300_0
- libopenblas=0.3.27=pthreads_hac2b453_1
- libparquet=15.0.0=h352af49_8_cpu
- libpng=1.6.43=h2797004_0
- libprotobuf=4.25.3=h08a7969_0
- libre2-11=2023.09.01=h5a48ba9_2
- libsanitizer=14.1.0=hcba0ae0_1
- libsqlite=3.46.0=hde9e2c9_0
- libssh2=1.11.0=h0841786_0
- libstdcxx=14.1.0=hc0a3c3a_1
- libstdcxx-devel_linux-64=14.1.0=h5d3d1c9_101
- libstdcxx-ng=14.1.0=h4852527_1
- libthrift=0.19.0=hb90f79a_1
- libtiff=4.6.0=h1dd3fc0_3
- libunistring=0.9.10=h7f98852_0
- libutf8proc=2.8.0=h166bdaf_0
- libuuid=2.38.1=h0b41bf4_0
- libwebp=1.4.0=h2c329e2_0
- libwebp-base=1.4.0=hd590300_0
- libxcb=1.15=h0b41bf4_0
- libxcrypt=4.4.36=hd590300_1
- libxml2=2.12.7=hc051c1a_1
- libxslt=1.1.39=h76b75d6_0
- libzlib=1.2.13=h4ab18f5_6
- lxml=5.2.2=py312hb90d8a5_0
- lz4-c=1.9.4=hcb278e6_0
- make=4.3=hd18ef5c_1
- mmseqs2=15.6f452=pl5321h6a68c12_3
- mpfr=4.2.1=h90cbb55_3
- mygene=3.2.2=pyh5e36f6f_0
- ncurses=6.5=he02047a_1
- numpy=1.26.4=py312heda63a1_0
- openssl=3.3.2=hb9d3cd8_0
- orc=1.9.2=h1e5e2c1_3
- packaging=24.1=pyhd8ed1ab_0
- pandas=2.1.4=py312hfb8ada1_0
- pango=1.54.0=h4c5309f_1
- pcre2=10.43=hcad00b1_0
- perl=5.32.1=7_hd590300_perl5
- perl-apache-test=1.43=pl5321hdfd78af_0
- perl-app-cpanminus=1.7048=pl5321hd8ed1ab_0
- perl-b-cow=0.007=pl5321hd590300_0
- perl-b-hooks-endofscope=0.26=pl5321h9f5acd7_1
- perl-base=2.23=pl5321hdfd78af_2
- perl-bioperl-core=1.7.8=pl5321hdfd78af_1
- perl-business-isbn=3.007=pl5321hdfd78af_0
- perl-business-isbn-data=20210112.006=pl5321hdfd78af_0
- perl-carp=1.50=pl5321hd8ed1ab_0
- perl-class-inspector=1.36=pl5321hdfd78af_0
- perl-class-load=0.25=pl5321hdfd78af_1
- perl-class-load-xs=0.10=pl5321h9f5acd7_6
- perl-class-methodmaker=2.24=pl5321h031d066_5
- perl-clone=0.46=pl5321hec16e2b_0
- perl-compress-raw-zlib=2.202=pl5321hadc24fc_0
- perl-constant=1.33=pl5321hdfd78af_2
- perl-cpan-meta-check=0.014=pl5321hdfd78af_1
- perl-cpan-meta-requirements=2.143=pl5321hdfd78af_0
- perl-data-optlist=0.113=pl5321ha770c72_0
- perl-db_file=1.858=pl5321h166bdaf_0
- perl-devel-globaldestruction=0.14=pl5321hdfd78af_1
- perl-devel-overloadinfo=0.007=pl5321hdfd78af_0
- perl-devel-stacktrace=2.04=pl5321hdfd78af_1
- perl-digest-hmac=1.04=pl5321hdfd78af_0
- perl-digest-md5=2.58=pl5321hec16e2b_1
- perl-dist-checkconflicts=0.11=pl5321hdfd78af_3
- perl-encode=3.21=pl5321hb9d3cd8_1
- perl-encode-locale=1.05=pl5321hdfd78af_7
- perl-eval-closure=0.14=pl5321h9f5acd7_6
- perl-exporter=5.74=pl5321hd8ed1ab_0
- perl-exporter-tiny=1.002002=pl5321hdfd78af_0
- perl-extutils-makemaker=7.70=pl5321hd8ed1ab_0
- perl-file-listing=6.16=pl5321hdfd78af_0
- perl-file-path=2.18=pl5321hd8ed1ab_0
- perl-file-pushd=1.016=pl5321hdfd78af_2
- perl-file-share=0.25=pl5321hdfd78af_3
- perl-file-sharedir=1.118=pl5321hdfd78af_0
- perl-file-sharedir-install=0.13=pl5321hdfd78af_1
- perl-file-spec=3.48_01=pl5321hdfd78af_2
- perl-file-temp=0.2304=pl5321hd8ed1ab_0
- perl-getopt-long=2.58=pl5321hdfd78af_0
- perl-graph=0.9729=pl5321hdfd78af_0
- perl-heap=0.80=pl5321hdfd78af_1
- perl-html-parser=3.81=pl5321h4ac6f70_1
- perl-html-tagset=3.20=pl5321hdfd78af_4
- perl-http-cookies=6.10=pl5321hdfd78af_0
- perl-http-daemon=6.16=pl5321hdfd78af_0
- perl-http-date=6.06=pl5321hdfd78af_0
- perl-http-message=6.36=pl5321hdfd78af_0
- perl-http-negotiate=6.01=pl5321hdfd78af_4
- perl-importer=0.026=pl5321hdfd78af_0
- perl-inc-latest=0.500=pl5321ha770c72_0
- perl-io-html=1.004=pl5321hdfd78af_0
- perl-io-socket-ssl=2.075=pl5321hd8ed1ab_0
- perl-io-tty=1.16=pl5321hec16e2b_1
- perl-ipc-run=20200505.0=pl5321hdfd78af_0
- perl-libwww-perl=6.39=pl5321hdfd78af_1
- perl-list-moreutils=0.430=pl5321hdfd78af_0
- perl-list-moreutils-xs=0.430=pl5321h031d066_3
- perl-lwp-mediatypes=6.04=pl5321hdfd78af_1
- perl-lwp-protocol-https=6.10=pl5321hdfd78af_0
- perl-lwp-simple=6.39=pl5321h9ee0642_5
- perl-mime-base64=3.16=pl5321hec16e2b_2
- perl-module-build=0.4232=pl5321ha770c72_0
- perl-module-implementation=0.09=pl5321hdfd78af_3
- perl-module-metadata=1.000038=pl5321hdfd78af_0
- perl-module-runtime=0.016=pl5321hdfd78af_2
- perl-module-runtime-conflicts=0.003=pl5321hdfd78af_1
- perl-moose=2.2207=pl5321hd590300_0
- perl-mozilla-ca=20211001=pl5321hdfd78af_0
- perl-mro-compat=0.15=pl5321hdfd78af_0
- perl-namespace-clean=0.27=pl5321h9f5acd7_6
- perl-net-http=6.22=pl5321hdfd78af_0
- perl-net-ssleay=1.92=pl5321hf14f497_1
- perl-ntlm=1.09=pl5321hdfd78af_5
- perl-package-deprecationmanager=0.18=pl5321ha770c72_0
- perl-package-stash=0.40=pl5321h87f3376_1
- perl-package-stash-xs=0.30=pl5321h0b41bf4_0
- perl-params-util=1.102=pl5321h9f5acd7_1
- perl-parent=0.241=pl5321hd8ed1ab_0
- perl-pathtools=3.75=pl5321hec16e2b_3
- perl-pod-escapes=1.07=pl5321hdfd78af_2
- perl-regexp-common=2017060201=pl5321hdfd78af_1
- perl-safe=2.37=pl5321hdfd78af_2
- perl-scalar-list-utils=1.63=pl5321hb9d3cd8_1
- perl-scope-guard=0.21=pl5321hdfd78af_3
- perl-set-object=1.42=pl5321h031d066_4
- perl-socket=2.027=pl5321h031d066_4
- perl-sort-naturally=1.03=pl5321hdfd78af_3
- perl-statistics-r=0.34=pl5321r43hdfd78af_6
- perl-storable=3.15=pl5321hec16e2b_3
- perl-sub-exporter=0.989=pl5321ha770c72_1
- perl-sub-exporter-progressive=0.001013=pl5321hdfd78af_1
- perl-sub-identify=0.14=pl5321hec16e2b_2
- perl-sub-info=0.002=pl5321hdfd78af_1
- perl-sub-install=0.928=pl5321hdfd78af_3
- perl-sub-name=0.26=pl5321h0b41bf4_1
- perl-term-progressbar=2.22=pl5321hdfd78af_1
- perl-term-table=0.023=pl5321hdfd78af_0
- perl-test=1.26=pl5321hdfd78af_2
- perl-test-cleannamespaces=0.24=pl5321hdfd78af_1
- perl-test-fatal=0.016=pl5321hdfd78af_0
- perl-test-harness=3.44=pl5321hdfd78af_0
- perl-test-leaktrace=0.17=pl5321hec16e2b_1
- perl-test-requiresinternet=0.05=pl5321hdfd78af_1
- perl-test-warnings=0.031=pl5321hdfd78af_0
- perl-test2-suite=0.000145=pl5321hdfd78af_0
- perl-text-balanced=2.06=pl5321hdfd78af_0
- perl-text-wrap=2021.0814=pl5321hdfd78af_0
- perl-time-local=1.35=pl5321hdfd78af_0
- perl-timedate=2.33=pl5321hdfd78af_2
- perl-try-tiny=0.31=pl5321hdfd78af_1
- perl-uri=5.17=pl5321ha770c72_0
- perl-url-encode=0.03=pl5321h9ee0642_1
- perl-variable-magic=0.63=pl5321hec16e2b_0
- perl-vars=1.03=pl5321hdfd78af_2
- perl-version=0.9924=pl5321hec16e2b_2
- perl-www-robotrules=6.02=pl5321hdfd78af_4
- perl-xsloader=0.24=pl5321hd8ed1ab_0
- perl-yaml=1.30=pl5321hdfd78af_0
- pip=24.2=pyh8b19718_1
- pixman=0.43.2=h59595ed_0
- platformdirs=4.2.2=pyhd8ed1ab_0
- pooch=1.8.2=pyhd8ed1ab_0
- pthread-stubs=0.4=hb9d3cd8_1002
- pyarrow=15.0.0=py312h176e3d2_8_cpu
- pycparser=2.22=pyhd8ed1ab_0
- pyld=2.0.4=pyhd8ed1ab_0
- pysocks=1.7.1=pyha2e5f31_6
- python=3.12.3=hab00c5b_0_cpython
- python-dateutil=2.9.0=pyhd8ed1ab_0
- python-tzdata=2024.1=pyhd8ed1ab_0
- python_abi=3.12=5_cp312
- pytz=2024.1=pyhd8ed1ab_0
- pyyaml=6.0.2=py312h66e93f0_1
- r-base=4.3.3=hf0d99cb_1
- rdma-core=53.0=he02047a_0
- re2=2023.09.01=h7f4b329_2
- readline=8.2=h8228510_1
- requests=2.32.3=pyhd8ed1ab_0
- requests-cache=1.2.1=pyhd8ed1ab_0
- s2n=1.4.5=h06160fa_0
- samtools=1.21=h50ea8bc_0
- scikit-learn=1.3.2=py312h394d371_2
- scipy=1.14.0=py312h499d17b_2
- sed=4.8=he412f7d_0
- setuptools=72.1.0=pyhd8ed1ab_0
- six=1.16.0=pyh6c4a22f_0
- sklearn-pandas=2.2.0=pyhd8ed1ab_0
- snappy=1.1.10=hdb0a2a9_1
- sysroot_linux-64=2.17=h4a8ded7_18
- threadpoolctl=3.5.0=pyhc1e730c_0
- tk=8.6.13=noxft_h4845f30_101
- tktable=2.10=h8bc8fbc_6
- tqdm=4.66.5=pyhd8ed1ab_0
- typing-extensions=4.12.2=hd8ed1ab_0
- typing_extensions=4.12.2=pyha770c72_0
- tzdata=2024a=h8827d51_1
- ucx=1.15.0=ha691c75_8
- ujson=5.10.0=py312h2ec8cdc_1
- url-normalize=1.4.3=pyhd8ed1ab_0
- urllib3=2.2.2=pyhd8ed1ab_1
- vsearch=2.29.0=h6a68c12_0
- wget=1.21.4=hda4d442_0
- wheel=0.44.0=pyhd8ed1ab_0
- xorg-kbproto=1.0.7=hb9d3cd8_1003
- xorg-libice=1.1.1=hb9d3cd8_1
- xorg-libsm=1.2.4=he73a12e_1
- xorg-libx11=1.8.9=h8ee46fc_0
- xorg-libxau=1.0.11=hb9d3cd8_1
- xorg-libxdmcp=1.1.3=hb9d3cd8_2
- xorg-libxext=1.3.4=h0b41bf4_2
- xorg-libxrender=0.9.11=hd590300_0
- xorg-libxt=1.3.0=hd590300_1
- xorg-renderproto=0.11.1=hb9d3cd8_1003
- xorg-xextproto=7.3.0=hb9d3cd8_1004
- xorg-xproto=7.0.31=hb9d3cd8_1008
- xz=5.2.6=h166bdaf_0
- yaml=0.2.5=h7f98852_2
- zlib=1.2.13=h4ab18f5_6
- zstandard=0.23.0=py312hef9b889_1
- zstd=1.5.6=ha6fb4c9_0
- pip:
- graph-part==1.0.2
- networkx==3.3