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DOWNLOAD

  • Download individual datagroups to a folder under chemical curation files
  • Run download_uncurated_chemicals.py, after changing number of records in line 56
    • You will have to navigate to the new folder and press save
  • Run find_weird_cas.py for each csv, split chem cards with multiple cas, fix mistakes
  • Redownload csvs for the groups that were fixes
  • Run katherine_clean_chems.py
  • Send files to Sakshi
  • run skipped_rows_csv.py
  • upload the skipped rows csvs to Factotum

UPLOAD

  • run format_curated_chems.py
  • try to upload chems
  • If there are errors for specific rows, it is probably because those records have been removed from Factotum
    • review records that are causing errors
    • run csv_remove_rows.py to remove messed up rows (copy and paste the row numbers directly from Factotum to line 12, and edit filename and folder)
  • try to upload again