DOWNLOAD
- Download individual datagroups to a folder under chemical curation files
- Run download_uncurated_chemicals.py, after changing number of records in line 56
- You will have to navigate to the new folder and press save
- Run find_weird_cas.py for each csv, split chem cards with multiple cas, fix mistakes
- Redownload csvs for the groups that were fixes
- Run katherine_clean_chems.py
- Send files to Sakshi
- run skipped_rows_csv.py
- upload the skipped rows csvs to Factotum
UPLOAD
- run format_curated_chems.py
- try to upload chems
- If there are errors for specific rows, it is probably because those records have been removed from Factotum
- review records that are causing errors
- run csv_remove_rows.py to remove messed up rows (copy and paste the row numbers directly from Factotum to line 12, and edit filename and folder)
- try to upload again