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setup.py
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46 lines (43 loc) · 1.11 KB
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from setuptools import find_packages, setup
with open('jamie/_meta.py') as version_file:
exec(version_file.read())
with open('README.md') as r:
readme = r.read()
setup(
name='JAMIE',
author='Noah Cohen Kalafut',
description='Joint Variational Autoencoders for Multi-Modal Imputation and Embedding',
long_description=readme,
long_description_content_type="text/markdown",
version=__version__,
packages=find_packages(exclude=('tests')),
install_requires=[
'adjustText',
'anndata',
'brokenaxes',
'matplotlib',
'numpy',
'pandas',
'pynndescent==0.5.8', # UMAP Incompatibility
'scanpy',
'scikit-learn-extra',
'scipy',
'seaborn',
'scikit-learn',
'torch',
'torchvision',
'umap-learn',
'unioncom',
],
extras_require={
'dev': [
'pip-tools',
],
'notebooks': [
'mmd_wrapper @ git+https://[email protected]/Oafish1/[email protected]',
'openpyxl',
'shap',
],
},
tests_require=['pytest'],
)