tests

MEmilio Unit Tests

Unit tests for the MEmilio C++ library using the GoogleTest framework.

Data handling

Inputdata that cannot be included in the source code itself is collected in the data directory. The path to the directory is discovered by CMake during configuration. That means the compiled unit tests can only be run succesfully if the source directory has not been deleted after building the tests and is not otherwise unreachable. Use load_test_data.h to access the data.

Some tests write data to the filesystem. The tests try to use the temp directory provided by the operating system. The current directory is used if no temp directory can be found. Files created during tests are deleted afterwards if possible. See temp_file_register.h

Running code coverage analysis

Code coverage analysis currently only works on linux with the "Makefile" generator and in Debug mode. To perform the analysis, configure cmake as follows

cmake -DCMAKE_BUILD_TYPE=Debug -DMEMILIO_TEST_COVERAGE=ON ..

This step needs to have the tool lcov installed. To execute the coverage, run

cmake --build . --target coverage

It will generate a html report inside the coverage directory.

MEMILIO_TEST_COVERAGE: compile libraries and unit tests for coverage analysis, only available in Debug builds, ON or OFF, default OFF.

Name		Name	Last commit message	Last commit date
parent directory ..
cmake		cmake
data		data
CMakeLists.txt		CMakeLists.txt
README.md		README.md
abm_helpers.cpp		abm_helpers.cpp
abm_helpers.h		abm_helpers.h
actions.h		actions.h
distributions_helpers.cpp		distributions_helpers.cpp
distributions_helpers.h		distributions_helpers.h
load_test_data.h		load_test_data.h
matchers.cpp		matchers.cpp
matchers.h		matchers.h
random_number_test.h		random_number_test.h
sanitizers.cpp		sanitizers.cpp
sir_example_pre_agegroups.txt		sir_example_pre_agegroups.txt
temp_file_register.h		temp_file_register.h
test_abm_household.cpp		test_abm_household.cpp
test_abm_infection.cpp		test_abm_infection.cpp
test_abm_location.cpp		test_abm_location.cpp
test_abm_lockdown_rules.cpp		test_abm_lockdown_rules.cpp
test_abm_masks.cpp		test_abm_masks.cpp
test_abm_mobility_rules.cpp		test_abm_mobility_rules.cpp
test_abm_model.cpp		test_abm_model.cpp
test_abm_person.cpp		test_abm_person.cpp
test_abm_serialization.cpp		test_abm_serialization.cpp
test_abm_simulation.cpp		test_abm_simulation.cpp
test_abm_testing_strategy.cpp		test_abm_testing_strategy.cpp
test_abstract_parameter_dist.cpp		test_abstract_parameter_dist.cpp
test_ad.cpp		test_ad.cpp
test_analyze_result.cpp		test_analyze_result.cpp
test_binary_serializer.cpp		test_binary_serializer.cpp
test_compartments_simulation.cpp		test_compartments_simulation.cpp
test_contact_matrix.cpp		test_contact_matrix.cpp
test_custom_index_array.cpp		test_custom_index_array.cpp
test_d_abm_model.cpp		test_d_abm_model.cpp
test_damping.cpp		test_damping.cpp
test_damping_sampling.cpp		test_damping_sampling.cpp
test_data_dir.h.in		test_data_dir.h.in
test_date.cpp		test_date.cpp
test_distance.cpp		test_distance.cpp
test_dynamic_npis.cpp		test_dynamic_npis.cpp
test_eigen_util.cpp		test_eigen_util.cpp
test_epi_data_io.cpp		test_epi_data_io.cpp
test_feedback.cpp		test_feedback.cpp
test_flows.cpp		test_flows.cpp
test_geography.cpp		test_geography.cpp
test_glct_secir.cpp		test_glct_secir.cpp
test_graph.cpp		test_graph.cpp
test_graph_abm.cpp		test_graph_abm.cpp
test_graph_simulation.cpp		test_graph_simulation.cpp
test_history.cpp		test_history.cpp
test_ide_parameters_io.cpp		test_ide_parameters_io.cpp
test_ide_secir.cpp		test_ide_secir.cpp
test_ide_secir_ageres.cpp		test_ide_secir_ageres.cpp
test_ide_seir.cpp		test_ide_seir.cpp
test_io_cli.cpp		test_io_cli.cpp
test_io_framework.cpp		test_io_framework.cpp
test_json_serializer.cpp		test_json_serializer.cpp
test_lct_initializer_flows.cpp		test_lct_initializer_flows.cpp
test_lct_parameters_io.cpp		test_lct_parameters_io.cpp
test_lct_secir.cpp		test_lct_secir.cpp
test_lct_secir_2_diseases.cpp		test_lct_secir_2_diseases.cpp
test_math_floating_point.cpp		test_math_floating_point.cpp
test_math_time_series_functor.cpp		test_math_time_series_functor.cpp
test_matrix_shape.cpp		test_matrix_shape.cpp
test_metaprogramming.cpp		test_metaprogramming.cpp
test_mobility.cpp		test_mobility.cpp
test_mobility_io.cpp		test_mobility_io.cpp
test_model.cpp		test_model.cpp
test_numericalIntegration.cpp		test_numericalIntegration.cpp
test_odemseirs4.cpp		test_odemseirs4.cpp
test_odeseair.cpp		test_odeseair.cpp
test_odesecir.cpp		test_odesecir.cpp
test_odesecir_ageres.cpp		test_odesecir_ageres.cpp
test_odesecirts.cpp		test_odesecirts.cpp
test_odesecirvvs.cpp		test_odesecirvvs.cpp
test_odeseir.cpp		test_odeseir.cpp
test_odeseirdb.cpp		test_odeseirdb.cpp
test_odeseirv.cpp		test_odeseirv.cpp
test_odesir.cpp		test_odesir.cpp
test_parameter_set.cpp		test_parameter_set.cpp
test_parameter_studies.cpp		test_parameter_studies.cpp
test_populations.cpp		test_populations.cpp
test_random_number_generator.cpp		test_random_number_generator.cpp
test_regions.cpp		test_regions.cpp
test_save_parameters.cpp		test_save_parameters.cpp
test_save_results.cpp		test_save_results.cpp
test_sde_seirvv.cpp		test_sde_seirvv.cpp
test_sde_sir.cpp		test_sde_sir.cpp
test_sde_sirs.cpp		test_sde_sirs.cpp
test_smm_model.cpp		test_smm_model.cpp
test_smoother.cpp		test_smoother.cpp
test_state_age_function.cpp		test_state_age_function.cpp
test_stl_util.cpp		test_stl_util.cpp
test_temporal_hybrid_model.cpp		test_temporal_hybrid_model.cpp
test_time_series.cpp		test_time_series.cpp
test_timers.cpp		test_timers.cpp
test_type_safe.cpp		test_type_safe.cpp
test_uncertain.cpp		test_uncertain.cpp
test_uncertain_ad_compatibility.cpp		test_uncertain_ad_compatibility.cpp

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