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pyproject.toml
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39 lines (35 loc) · 996 Bytes
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# Poetry configuration file for the single-cell compound prioritization project
[tool.poetry]
name = "buscar"
version = "0.1.0"
description = "A Python framework for prioritizing compounds in high-content imaging drug screening using single-cell profiles."
authors = ["Erik Serrano <[email protected]>"]
readme = "README.md"
[tool.poetry.dependencies]
python = ">=3.10,<3.14"
numpy = ">=2.2.5,<3.0.0"
scipy = ">=1.15.3,<2.0.0"
matplotlib = ">=3.10.3,<4.0.0"
polars = ">=1.29.0,<2.0.0"
statsmodels = ">=0.14.4,<0.15.0"
scikit-learn = ">=1.6.1,<2.0.0"
pycytominer = ">=1.2.3,<2.0.0"
jupyter = "^1.1.1"
ipykernel = "^6.29.5"
tqdm = "^4.67.1"
pot = "^0.9.5"
beartype = "^0.21.0"
umap-learn = "^0.5.9.post2"
narwhals = "^2.4.0"
optuna = "^4.5.0"
scanpy = "^1.11.4"
igraph = "^0.11.9"
leidenalg = "^0.10.2"
louvain = "^0.8.2"
requests = "^2.32.5"
[tool.poetry.group.dev.dependencies]
pytest = "^8.4.1"
pre-commit = "^4.2.0"
# ruff configuration
[tool.ruff.lint.pydocstyle]
convention = "numpy"