This directory contains external packages for building strelka.

To reduce size, certain files have been removed from the full boost source distribution acccording to:

${ROOT_PATH}/scratch/make_boost_subset.bash

To reduce size, both packages have been modified to remove the test directories and test references in the makefiles. The copy of htslib in samtools has been removed.

Note that an off-release htslib version is used here because the fix to issue samtools/htslib#654 is required for valid analysis from alignments in CRAM format.

cmake-modules-c99fd3 modified to show git describe --dirty

Only providing include/ and license.txt from the full rapidjson release tarball.