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Merge pull request gpertea#133 from razsultana/patch-1
Update README.md
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README.md

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##Obtaining and installing StringTie
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## Obtaining and installing StringTie
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The current version of StringTie can also be downloaded from
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http://ccb.jhu.edu/software/stringtie
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significantly slower than the optimized version which is obtained by using
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`make release`.
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##Running StringTie
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## Running StringTie
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Run stringtie from the command line like this:
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'''
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-l <label> name prefix for output transcripts (default: MSTRG)
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```
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##Input files
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## Input files
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StringTie takes as input a binary SAM (BAM) file sorted by reference position.

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