FROM ubuntu:21.04

RUN apt-get update -y && apt-get -y install wget libgl1-mesa-glx libegl1-mesa libxrandr2 libxrandr2 libxss1 libxcursor1 libxcomposite1 libasound2 libxi6 libxtst6 libcurl4-openssl-dev build-essential git zlib1g zlib1g-dev

RUN apt-get install -y unzip \

&& rm -rf /var/lib/apt/lists/*

RUN useradd bioconvert -g users -m

USER bioconvert

ENV PATH /home/bioconvert/miniconda3/bin:$PATH

WORKDIR /home/bioconvert

RUN wget https://repo.continuum.io/miniconda/Miniconda3-py37_4.11.0-Linux-x86_64.sh -O miniconda.sh && \

chmod +x miniconda.sh && \

bash miniconda.sh -b -p $HOME/miniconda3 && \

export PATH=$HOME/miniconda3/bin:$PATH && \

hash -r && \

conda update --yes conda && \

conda config --add channels r && \

conda config --add channels conda-forge && \

conda config --add channels bioconda

COPY spec-file.txt spec-file.txt

RUN conda install --yes --file spec-file.txt

RUN conda install --yes pybigwig

RUN pip install --upgrade pip && pip install bioconvert==0.6.3