Hi, thanks for creating this wonderful package!
Is it possible to efficiently extract the entries from a file (BED/BAM/VCF) that correspond to a given set of intervals without having to go through the whole file as shown in your Enformer example?
I was looking for something along the lines of get_interval_sequences but for the rest of file types. I am quite new in the bionumpy framework so most likely I missed this option from the tutorials...
Thanks a lot in advance! Best,
Miquel
Hi, thanks for creating this wonderful package!
Is it possible to efficiently extract the entries from a file (BED/BAM/VCF) that correspond to a given set of intervals without having to go through the whole file as shown in your Enformer example?
I was looking for something along the lines of
get_interval_sequencesbut for the rest of file types. I am quite new in thebionumpyframework so most likely I missed this option from the tutorials...Thanks a lot in advance! Best,
Miquel