CFLAGS = -O2 -std=c++11 -Wno-alloc-size-larger-than # -Wall

INCL = -I . -I tclap-1.2.5/include

SRC = MitoGeneExtractor.cpp \

global-types-and-parameters_MitoGeneExtractor.cpp \

exonerate_wrapper_and_parser.cpp

HEADER = CDnaString3.h CSequence_Mol3.1.h CSequences3.1.h CSplit2.h Ctriple.h \

basic-DNA-RNA-AA-routines.h fast-realloc-vector.h faststring3.h \

global-types-and-parameters_MitoGeneExtractor.h primefactors.h statistic_functions.h \

exonerate_wrapper_and_parser.hpp Cfastq-sequences3.1.h

all: MitoGeneExtractor-v1.9.6

MitoGeneExtractor-v1.9.6: $(SRC) $(HEADER)

g++ $(CFLAGS) $(INCL) $(SRC) -o MitoGeneExtractor-v1.9.6

clean:

rm -f MitoGeneExtractor-v1.9.6