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pyproject.toml
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215 lines (201 loc) · 5.29 KB
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[project]
name = "shortkit-ml"
version = "0.1.0"
description = "ShortKIT-ML: A toolkit for detecting shortcuts and biases in embedding spaces"
authors = [
{name = "Sebastian Cajas"},
{name = "Aldo Marzullo"},
{name = "Sahil Kapadia"},
{name = "Qingpeng Kong"},
{name = "Filipe Santos"},
{name = "Alessandro Quarta"},
{name = "Leo Celi"},
]
readme = {file = "README.md", content-type = "text/markdown"}
requires-python = ">=3.10,<3.13"
license = {text = "MIT"}
keywords = ["machine-learning", "bias-detection", "embeddings", "fairness", "shortcuts"]
classifiers = [
"Development Status :: 3 - Alpha",
"Intended Audience :: Science/Research",
"Topic :: Scientific/Engineering :: Artificial Intelligence",
"License :: OSI Approved :: MIT License",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
]
dependencies = [
"numpy>=1.24.0,<2.0.0",
"pandas>=2.0.0,<3.0.0",
"scikit-learn>=1.3.0,<2.0.0",
"scipy>=1.11.0,<2.0.0",
"statsmodels>=0.14.0,<1.0.0", # Multiple testing correction
"matplotlib>=3.7.0,<4.0.0",
"seaborn>=0.12.0,<1.0.0",
"joblib>=1.3.0,<2.0.0",
# PyTorch - CUDA 12.1 compatible
# Note: Install separately with:
# uv pip install torch==2.2.0+cu121 torchvision==0.17.0+cu121 --index-url https://download.pytorch.org/whl/cu121
"torch>=2.2.0,<2.3.0",
"torchvision>=0.17.0,<0.18.0",
"openpyxl>=3.1.0,<4.0.0",
# Dashboard and reporting (app + PDF)
"gradio>=5.0.0",
"plotly>=5.17.0",
"jinja2>=3.1.0",
"markdown>=3.5.0",
# PDF export: weasyprint also needs system libs (not installable via pip).
# See README "System Dependencies for PDF Export": macOS: brew install pango gdk-pixbuf libffi
"weasyprint>=60.0",
]
[project.optional-dependencies]
dev = [
"pytest>=7.4.0",
"pytest-cov>=4.1.0",
"pytest-xdist>=3.3.0", # parallel testing
"black>=23.0.0",
"ruff>=0.1.0",
"mypy>=1.5.0",
"pre-commit>=3.5.0",
]
e2e = [
"playwright>=1.40.0",
]
docs = [
"mkdocs>=1.5.0",
"mkdocs-material>=9.5.0",
"mkdocstrings[python]>=0.24.0",
"pymdown-extensions>=10.0",
]
jupyter = [
"jupyter>=1.0.0",
"ipykernel>=6.25.0",
"nbconvert>=7.8.0",
"ipywidgets>=8.1.0",
]
reporting = [
"plotly>=5.17.0",
"jinja2>=3.1.0", # HTML templating
"markdown>=3.5.0", # Markdown generation
"weasyprint>=60.0", # PDF generation (optional)
"openpyxl>=3.1.0", # Excel file support
]
dashboard = [
"gradio>=5.0.0", # Interactive web interface
]
hf = [
"transformers>=4.39.0",
]
vae = [
"torch>=2.2.0,<2.3.0",
"torchvision>=0.17.0,<0.18.0",
]
mcp = [
"mcp>=1.0.0",
]
all = [
# Aggregated extras for docs, reporting, dashboard, hf, and dev tools
"black>=23.0.0",
"mcp>=1.0.0",
"gradio>=5.0.0",
"ipykernel>=6.25.0",
"ipywidgets>=8.1.0",
"jinja2>=3.1.0",
"markdown>=3.5.0",
"mypy>=1.5.0",
"mkdocstrings[python]>=0.24.0",
"mkdocs-material>=9.5.0",
"mkdocs>=1.5.0",
"nbconvert>=7.8.0",
"openpyxl>=3.1.0",
"plotly>=5.17.0",
"pre-commit>=3.5.0",
"pymdown-extensions>=10.0",
"pytest-cov>=4.1.0",
"pytest-xdist>=3.3.0",
"pytest>=7.4.0",
"ruff>=0.1.0",
"torch>=2.2.0,<2.3.0",
"torchvision>=0.17.0,<0.18.0",
"transformers>=4.39.0",
"weasyprint>=60.0",
]
[project.scripts]
shortkit-ml-mcp = "shortcut_detect.mcp_server:main"
[project.urls]
Homepage = "https://github.com/criticaldata/ShortKit-ML"
Documentation = "https://criticaldata.github.io/ShortKit-ML/"
Repository = "https://github.com/criticaldata/ShortKit-ML"
Issues = "https://github.com/criticaldata/ShortKit-ML/issues"
[build-system]
requires = ["setuptools>=68.0.0", "wheel"]
build-backend = "setuptools.build_meta"
[tool.setuptools.packages.find]
where = ["."]
include = ["shortcut_detect*"]
exclude = ["tests*", "examples*", "docs*"]
[tool.setuptools.package-data]
"shortcut_detect.conditions" = ["*.joblib", "*.meta.json"]
[tool.pytest.ini_options]
testpaths = ["tests"]
python_files = "test_*.py"
python_classes = "Test*"
python_functions = "test_*"
addopts = [
"-v",
"--strict-markers",
]
markers = [
"e2e: end-to-end tests requiring Playwright and dashboard (deselect with -m 'not e2e')",
]
[tool.black]
line-length = 100
target-version = ["py310", "py311", "py312"]
include = '\.pyi?$'
exclude = '''
/(
\.git
| \.venv
| \.eggs
| build
| dist
)/
'''
[tool.ruff]
line-length = 100
[tool.ruff.lint]
select = [
"E", # pycodestyle errors
"W", # pycodestyle warnings
"F", # pyflakes
"I", # isort
"B", # flake8-bugbear
"C4", # flake8-comprehensions
"UP", # pyupgrade
]
ignore = [
"E501", # line too long (handled by black)
"B008", # do not perform function calls in argument defaults
]
[tool.mypy]
python_version = "3.10"
warn_return_any = true
warn_unused_configs = true
disallow_untyped_defs = false # Set to true for strict typing
ignore_missing_imports = true
[tool.coverage.run]
source = ["shortcut_detect"]
omit = [
"*/tests/*",
"*/examples/*",
"*/__init__.py",
]
[tool.coverage.report]
exclude_lines = [
"pragma: no cover",
"def __repr__",
"raise AssertionError",
"raise NotImplementedError",
"if __name__ == .__main__.:",
"if TYPE_CHECKING:",
]