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Commits on Dec 4, 2021

• Update create_rna_sr.py

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• version bump to 2.2.0

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Commits on Nov 6, 2021

• Merge pull request #264 from ljyanesm/patch-1

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• Merge pull request #342 from yollct/pydefaultdict

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• Update README.md

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Commits on Nov 5, 2021

• Update README.md

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• prevent curl failures

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• prevent curl SSL cert problem

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• merging htslib branch

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• merging htslib

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• tests added

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• run_tests_valgrind should use existing test_data

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• mix tests added

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• Update README.md

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• Update README.md

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• Update README.md

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Commits on Nov 4, 2021

• Update README.md

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• adjusting usage text

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Commits on Nov 3, 2021

• version bump prep

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• patched GSamReader::next() memory leak

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Commits on Oct 25, 2021

• mix-merge sync: improve transcriptome assembly on mixed data w/ annotation, small exon correction

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Commits on Oct 18, 2021

• use defaultdict instead of dict

  

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Commits on Sep 16, 2021

• nt

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• fixed CRAM fidelity issue, --ref/cram-ref option added

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Commits on Sep 15, 2021

• debugging inconsistent output vs samtools pipe

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Commits on Jul 6, 2021

• prep scripts update

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• updating prep scripts

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• updated gclib

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• minor gclib optimizations

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Commits on Jun 25, 2021

• fixed bug in fwd_to_sink_fast_long and back_to_source_fast_long deleting nodes from pathpat

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• added libbz2 build; merged mix-merge childonpath fix

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Commits on Jun 21, 2021

• nt

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• builds on MSYS2 as well

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Commits on Jun 19, 2021

• --merge works, transition to htslib completed

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Commits on Jun 17, 2021

• build ok, needs testing

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