

External data sources
-------------------------------------------------


It is possible to import data from different sources. There are wizards that guides the retrieval of data step by step.


.. list-table:: Gitools allows direct data-import from various external sources:
   :header-rows: 1
   
   * - Source
     - Data
     - Data types
     - Web
   
   * - `IntOGen <UserGuide_IntOGen.rst>`__
     - - Experiment transcriptomic alterations
       - Experiment copy number alterations
       - Combination transcriptomic alterations
       - Combination copy number alterations
       - Oncomodules for experiments
       - Oncomodules for combinations
     - Matrix, Modules, Annotations
     - `http://www.intogen.org <http://www.intogen.org>`__
   * - `KEGG <UserGuide_KEGG.rst>`__
     - Pathways
     - Modules, Annotations
     - `http://www.genome.jp/kegg/ <http://www.genome.jp/kegg/>`__
   * - `Gene Ontology <UserGuide_GeneOntology.rst>`__
     - - Biological processes
       - Molecular function
       - Cellular location
     - Modules, Annotations
     - `http://www.geneontology.org/ <http://www.geneontology.org/>`__
   * - `Biomart Central Portal <UserGuide_Biomart.rst>`__
     - There are many databases available, some examples are:
       - Ensembl
       - UniProt
       - Reactome
       - COSMIC
     - Modules, Tables
     - `http://www.biomart.org <http://www.biomart.org>`__
