

How To
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Michael P Schroeder



Table of Contents
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Here, you will find varied hints on common and less commonly used features of Gitools that shall help you to make the most of your analysis using Gitools.

`How to use MsigDB gene-sets in Gitools <UserGuide_HowtoMsigDB.rst>`__

`How to prepare matrix files for Gitools using a spreadsheet editor (e.g. Excel or OpenOffice) <UserGuide_HowtoMatrixFilesSpreadsheet.rst>`__

`How to prepare module files for Gitools using a spreadsheet editor (e.g. Excel or OpenOffice) <UserGuide_HowtoModuleFilesSpreadsheet.rst>`__

`How to open Gitools results with a spreadsheet editor (e.g. Excel or OpenOffice) <UserGuide_HowtoResultsFilesSpreadsheet.rst>`__

`How to add multiple gene annotations to heat maps <UserGuide_HowtoMultipleGeneAnnotations.rst>`__

`How to run Sample Level Enrichment Analysis in Gitools  <UserGuide_HowtoSLEA.rst>`__

`How to browse multi-dimensional data <UserGuide_HowtoMultiDimensionalData.rst>`__
