==================
Gitools User Guide
==================


- :doc:`UserGuide_Installation`
- :doc:`UserGuide_LoadSaveImportExport`
    - :doc:`UserGuide_GitoolsHeatmapsFormat`
    - :doc:`UserGuide_ImportingData`
        - :doc:`UserGuide_ExternalDataSources`
            - :doc:`UserGuide_IntOGen_Arrays`
            - :doc:`UserGuide_KEGG`
            - :doc:`UserGuide_GeneOntology`
            - :doc:`UserGuide_Biomart`
    - :doc:`UserGuide_Export`
        - :doc:`UserGuide_ExportHeatmapData`
        - :doc:`UserGuide_ExportHeatmapImages`
- :doc:`UserGuide_Visualization`
- :doc:`UserGuide_Interaction`
- :doc:`UserGuide_RunningAnalysis`
    - :doc:`UserGuide_Enrichment`
    - :doc:`UserGuide_Correlations`
    - :doc:`UserGuide_Overlaps`
    - :doc:`UserGuide_GroupComparison`
    - :doc:`UserGuide_Combinations`
    - :doc:`UserGuide_Oncodrive`

- :doc:`UserGuide_ExternalControl`
    - :doc:`UserGuide_ToolCommunication`
- :doc:`UserGuide_Howto`
    - :doc:`UserGuide_HowtoMsigDB`
    - :doc:`UserGuide_HowtoMatrixFilesSpreadsheet`
    - :doc:`UserGuide_HowtoModuleFilesSpreadsheet`
    - :doc:`UserGuide_HowtoResultsFilesSpreadsheet`
    - :doc:`UserGuide_HowtoMultipleGeneAnnotations`
    - :doc:`UserGuide_HowtoSLEA`
    - :doc:`UserGuide_HowtoMultiDimensionalData`



