========================
Download external data
========================

It is possible to import data from different sources. There are wizards that guides the retrieval of data step by step.


.. list-table:: Gitools allows direct data-import from various external sources:
   :header-rows: 1
   
   * - Source
     - Data
     - Data types
     - Web

   * - **Gitools Datasets**
     - Cancer genomics data from TCGA, CCLE and other sources
     - Complete Heatamps (Data matrices, modules & annotations)
     - `http://www.gitools.org/datasets <http://www.gitools.org/datasets>`__
   * - :doc:`UserGuide_KEGG`
     - Pathways
     - Modules, Annotations
     - `http://www.genome.jp/kegg/ <http://www.genome.jp/kegg/>`__
   * - :doc:`UserGuide_GeneOntology`
     - - Biological processes
       - Molecular function
       - Cellular location
     - Modules, Annotations
     - `http://www.geneontology.org/ <http://www.geneontology.org/>`__
   * - :doc:`UserGuide_Biomart`
     - There are many databases available, some examples are:
        - Ensembl
        - UniProt
        - Reactome
        - COSMIC
     - Modules, Annotations
     - `http://www.biomart.org <http://www.biomart.org>`__
