==================
Gitools User Guide
==================


*How to install Gitools*

- :doc:`UserGuide_Installation`


*Details about Gitools analysis possibilites*

- :doc:`UserGuide_Analysis`
    - :doc:`UserGuide_Enrichment`
    - :doc:`UserGuide_GroupComparison`
    - :doc:`UserGuide_MutualExclusivity`
    - :doc:`UserGuide_Correlations`
    - :doc:`UserGuide_Overlaps`
    - :doc:`UserGuide_Combinations`

*Data*

- :doc:`UserGuide_LoadSaveImportExport`
    - :doc:`UserGuide_GitoolsHeatmapsFormat`
    - :doc:`UserGuide_DataTypes`
    - :doc:`UserGuide_Export`
    - :doc:`UserGuide_ExternalDataSources`
- :doc:`UserGuide_DataEvents`


*External control*

- :doc:`UserGuide_ExternalControl`
    - :doc:`UserGuide_ToolCommunication`

*How To's*

- :doc:`UserGuide_Howto`
    - :doc:`UserGuide_HowtoMsigDB`
    - :doc:`UserGuide_HowtoModuleFilesSpreadsheet`
    - :doc:`UserGuide_HowtoResultsFilesSpreadsheet`
    - :doc:`UserGuide_HowtoSLEA`



