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Commits on Jul 6, 2021

• minor gclib optimizations

  gpertea

  committed
  61f2455

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Commits on Jun 25, 2021

• fixed bug in fwd_to_sink_fast_long and back_to_source_fast_long deleting nodes from pathpat

  gpertea

  committed
  33a2076

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Commits on Jun 14, 2021

• fixed --mix bug

  gpertea

  committed
  90fb546

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Commits on Jun 4, 2021

• merged mix-merge branch

  gpertea

  committed
  823e948

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• slight speed up in GBam setupCoordinates()

  gpertea

  committed
  b9a53f2

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Commits on May 30, 2021

• another try to rlink.cpp dealing with deletion around introns

  

  Mihaela Pertea

  committed
  122f896

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Commits on May 29, 2021

• fix in rlink.cpp dealing with deletion around junctions

  

  Mihaela Pertea

  committed
  cce5b77

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• another try at fixing GBamRecord::setupCoordinates()

  

  Mihaela Pertea

  committed
  29baa54

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• new try to fix deletion around introns

  

  Mihaela Pertea

  committed
  28a9a2e

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Commits on May 28, 2021

• reverted intron+deletion fix

  gpertea

  committed
  872e0cb

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• v2.1.5b

  gpertea

  committed
  df591fd

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• exon boundary fix when intron is followed/preceeded by a deletion

  gpertea

  committed
  fe176fd

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Commits on May 27, 2021

• change in GBam.cpp to account for deletion present at the ends of introns and extend the intron

  

  Mihaela Pertea

  committed
  6567202

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Commits on May 19, 2021

• fixed expression estimation error with mixed data

  

  Mihaela Pertea

  committed
  3c208b0

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Commits on Apr 18, 2021

• modified stringtie to see tiebrush YC tag

  

  Mihaela Pertea

  committed
  921c706

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Commits on Mar 9, 2021

• fixed v2.1.5 release

  gpertea

  committed
  c0aa561

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• no comments

  

  Mihaela Pertea

  committed
  5821dae

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• exiting transfrag fix

  

  Mihaela Pertea

  committed
  0f3f7d1

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Commits on Mar 7, 2021

• Merge branch 'mix-merge' of github.com:gpertea/stringtie into mix-merge

  

  Mihaela Pertea

  committed
  0ea3c6a

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• cds work in progress, load_cds_param done

  

  Mihaela Pertea

  committed
  074664f

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Commits on Mar 5, 2021

• v2.1.5 fix: adjust coverage estimation for long reads

  gpertea

  committed
  f33b7c3

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Commits on Feb 21, 2021

• fixed oopsie in GHashMap (not impacting StringTie)

  gpertea

  committed
  a14a803

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• merge with mix-merge

  

  Mihaela Pertea

  committed
  0f23593

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• clean up for new branch mix-merge

  

  Mihaela Pertea

  committed
  9a19f7d

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• memory leak patched

  gpertea

  committed
  befe341

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• nt

  gpertea

  committed
  c820d1f

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• added minor GStr optimizations

  gpertea

  committed
  fa74a50

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Commits on Feb 20, 2021

• profiling enabled

  gpertea

  committed
  6c51259

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Commits on Feb 19, 2021

• optimizing GStr to GIntHash in a few cases

  gpertea

  committed
  9938207

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• floating point issue?

  gpertea

  committed
  f252ecc

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• undo bit size tweaks

  gpertea

  committed
  ff7ebbc

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• switching to new gclib GHashMap

  gpertea

  committed
  c18d37b

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Commits on Feb 1, 2021

• prepDE minor adjustment to report parsing errors

  gpertea

  committed
  584cf94

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Commits on Jan 20, 2021

• jan 4 version

  gpertea

  committed
  65cfc77

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Commits on Jan 2, 2021

• re-added GIntHash.hh

  gpertea

  committed
  068b921

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