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Commits on Jan 29, 2020

• fixed small bug in trimming procedure

  mpertea

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Commits on Jan 26, 2020

• resolved rlink.cpp merge conflict

  mpertea

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  3419f20

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• New bug fixes in version2.1.0; Verifies consensus splice sites if genomic sequence is provided; Added option -R to output unassembled, cleaned, and collapsed redundant long reads

  

  Mihaela Pertea

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  a37fca5

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Commits on Jan 23, 2020

• gclib update/sync

  gpertea

  committed
  d8c07c1

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Commits on Jan 22, 2020

• fixed memory leak in rlink.cpp

  gpertea

  committed
  82a2e0e

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Commits on Jan 21, 2020

• Quick bug fix to 2.1.0, which had GBitVec going out of bounds

  mpertea

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  02b0ea8

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• v2.1.0 : improved start/end trimming for long reads; fixed issue #259

  gpertea

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Commits on Dec 23, 2019

• Update README.md

  gpertea

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  2af4583

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• Update README.md

  gpertea

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Commits on Dec 16, 2019

• bugfix release 2.0.6

  gpertea

  committed
  23dbf32

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Commits on Dec 13, 2019

• Update TODO.md

  gpertea

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  6a7d4da

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• Update and rename to_do.md to TODO.md

  gpertea

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  5504149

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• Update to_do.md

  gpertea

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  173b8a8

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• Create to_do.md

  gpertea

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  bcc1acc

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• possible fix for the multi-threading problem?

  gpertea

  committed
  ad4a455

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Commits on Dec 12, 2019

• clearing the bundle should be fully thread protected?

  gpertea

  committed
  df40812

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Commits on Dec 7, 2019

• Update README.md

  gpertea

  authored
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Commits on Nov 30, 2019

• version bump to 2.0.5

  gpertea

  committed
  dca6cd4

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• removed -J option from curl fetch command

  gpertea

  committed
  528ffac

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Commits on Nov 29, 2019

• Merge pull request #252 from smoe/patch-1

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  gpertea

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  c307d0a

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• rm binary "all_tests" in source tree

  smoe

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Commits on Nov 21, 2019

• allow compilation with CentOS 6 gcc 4.4

  

  root

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  29a72ed

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Commits on Nov 6, 2019

• sync latest gff.h changes

  gpertea

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  f4078ed

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Commits on Nov 5, 2019

• added -S as alternative to --rseq

  gpertea

  committed
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Commits on Nov 4, 2019

• added --rseq/--refseq to load genome sequence data for each bundle

  gpertea

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Commits on Nov 1, 2019

• removing a few unneeded samtools files

  gpertea

  committed
  7da25e0

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Commits on Oct 29, 2019

• updated prep_*.sh files to include prepDE.py

  gpertea

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  5344b21

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• fixed -e bug for unstranded alignments; fixed TPM -nan

  gpertea

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Commits on Oct 14, 2019

• prepDE change default directory behavior ( "." instead of "ballgown"), added -e -G checks, -v

  gpertea

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Commits on Sep 23, 2019

• properly revert to default GffExon copy operator

  gpertea

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• Merge branch 'master' of github.com:gpertea/stringtie

  gpertea

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  4366633

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• fixed GffExon::operator=

  gpertea

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Commits on Sep 8, 2019

• added thread sanitizer target to Makefile

  gpertea

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  227cb67

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• changed pthreads linking approach

  gpertea

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  91a5fce

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• traverse_dfs() proper fix (hopefully), v2.0.3

  gpertea

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