Commits

Branch selector

 master

User selector

All users

All time

Commit History

Commits on Apr 3, 2026

• Merge branch 'master' of github.com:ranlib/docker

  ranlib

  committed
  b0ef1d4

  Copy full SHA for b0ef1d4

• git Dockerfile: add bash

  ranlib

  committed
  9defacf

  Copy full SHA for 9defacf

Commits on Mar 24, 2026

• samtools: switch to ubuntu 25.04 and samtools/bcftools/htslib 1.23.1

  ranlib

  committed
  9303293

  Copy full SHA for 9303293

• freyja/Makefile: switch to version 2.0.3 for freyja

  ranlib

  committed
  7607204

  Copy full SHA for 7607204

• freyja/Dockerfile: use ubuntu 22.0 and python 3.11, freyja 2.0.3 dos not work with python 3.13

  ranlib

  committed
  5ac0379

  Copy full SHA for 5ac0379

Commits on Feb 6, 2026

• Merge branch 'master' of github.com:ranlib/docker

  ranlib

  committed
  6844bd1

  Copy full SHA for 6844bd1

• snpeff: update to version 5.4a

  ranlib

  committed
  678aba3

  Copy full SHA for 678aba3

Commits on Nov 5, 2025

• Merge branch 'master' of github.com:ranlib/docker

  ranlib

  committed
  19080ec

  Copy full SHA for 19080ec

• add git

  ranlib

  committed
  aac9701

  Copy full SHA for aac9701

Commits on Jul 21, 2025

• freyja: Makefile, change version string

  ranlib

  committed
  3514518

  Copy full SHA for 3514518

• add python3

  ranlib

  committed
  b35fcc8

  Copy full SHA for b35fcc8

Commits on Jul 17, 2025

• add freyja

  ranlib

  committed
  605d8ae

  Copy full SHA for 605d8ae

Commits on Jul 15, 2025

• samtools: switch to version 1.22.1

  ranlib

  committed
  81ef1fe

  Copy full SHA for 81ef1fe

• minimap2: switch to version 2.30

  ranlib

  committed
  d3f0af2

  Copy full SHA for d3f0af2

Commits on May 9, 2025

• update seqkit to version 2.10.0

  ranlib

  committed
  3970e32

  Copy full SHA for 3970e32

Commits on Apr 24, 2025

• add primer_trimmer

  ranlib

  committed
  2752690

  Copy full SHA for 2752690

Commits on Apr 21, 2025

• add pear

  ranlib

  committed
  63ce9b4

  Copy full SHA for 63ce9b4

Commits on Apr 3, 2025

• add NextDenovo

  ranlib

  committed
  6bcf1c6

  Copy full SHA for 6bcf1c6

• add trim-galore

  ranlib

  committed
  0274ace

  Copy full SHA for 0274ace

• fastp: update to newer version

  ranlib

  committed
  750a777

  Copy full SHA for 750a777

Commits on Mar 25, 2025

• Hifiasm: update Dockerfile

  ranlib

  committed
  5242c98

  Copy full SHA for 5242c98

Commits on Mar 14, 2025

• snpEff Makefile: switch to newer version v5.2f

  ranlib

  committed
  8ae39ea

  Copy full SHA for 8ae39ea

• switch to flye 2.9.5 and ubuntu 24.04

  ranlib

  committed
  8914734

  Copy full SHA for 8914734

Commits on Nov 19, 2024

• snpEff Dockerfile: switch to newer ubuntu version 24.04

  ranlib

  committed
  38234f2

  Copy full SHA for 38234f2

Commits on Nov 16, 2024

• nanosim: update Dockerfile to new version of nanosim; add Makefile

  ranlib

  committed
  743a16e

  Copy full SHA for 743a16e

Commits on Nov 9, 2024

• quast: use ubuntu 22.04, python2, switch to quast version 5.2.0

  ranlib

  committed
  b1d2b5f

  Copy full SHA for b1d2b5f

• seqkit: use ubuntu 24.04, switch to seqkit version v2.8.2

  ranlib

  committed
  009393a

  Copy full SHA for 009393a

• samtools: switch to version 1.21

  ranlib

  committed
  3994655

  Copy full SHA for 3994655

• add sniffles

  ranlib

  committed
  49fbf4b

  Copy full SHA for 49fbf4b

Commits on Nov 8, 2024

• snpEff: add Makefile, update Dockerfile

  ranlib

  committed
  e97e630

  Copy full SHA for e97e630

Commits on Sep 24, 2024

• add cutadapt

  ranlib

  committed
  e6a5b8c

  Copy full SHA for e6a5b8c

Commits on Aug 22, 2024

• centrifuge Dockefile: add python3

  ranlib

  committed
  3321ba9

  Copy full SHA for 3321ba9

Commits on Aug 15, 2024

• centrifuge Dockerfile and Makefile: new centrifuge version

  ranlib

  committed
  1e5b9ad

  Copy full SHA for 1e5b9ad

• add recentrifuge

  ranlib

  committed
  e6da5d0

  Copy full SHA for e6da5d0

Commits on Aug 8, 2024

• add metaphlan

  ranlib

  committed
  a0d3a28

  Copy full SHA for a0d3a28