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Commits on Aug 4, 2022

• Merge branch 'gpertea:master' into master

  rnshah9

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Commits on Jul 30, 2022

• Remove ldd

  rnshah9

  committed
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Commits on Jul 24, 2022

• reverse & remove !eonly condition in print_predcluster L 17039

  gpertea

  committed
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Commits on Jul 18, 2022

• minor GSam cleanup

  gpertea

  committed
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Commits on Jul 17, 2022

• switch to minimum g++ version 5

  gpertea

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Commits on Jun 23, 2022

• Merge pull request #371 from gsatas/fix-covref-write-concurrency

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  gpertea

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Commits on Jun 21, 2022

• Add package stage

  rnshah9

  committed
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Commits on Jun 13, 2022

• fix #348 . Adds mutex to manage concurrent writing to covered reference transcript file

  gsatas

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Commits on Jun 3, 2022

• Integrate Mayhem

  rnshah9

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Commits on Mar 4, 2022

• another take at preventing hanging terminal introns

  gpertea

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Commits on Mar 3, 2022

• ignoring terminal hanging introns, addressing issue #356

  gpertea

  committed
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Commits on Jan 28, 2022

• note about a desired jcov metric in print_predcluster()

  gpertea

  committed
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Commits on Jan 26, 2022

• remove test data override

  gpertea

  committed
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• revert previous cov<1 check to only apply when !eonly

  gpertea

  committed
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Commits on Jan 25, 2022

• ver bump to 2.2.1, test output included in distribution

  gpertea

  committed
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• fixed bug that forced a hardcoded >=1 coverage output threshold

  gpertea

  committed
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Commits on Jan 10, 2022

• addressing PTF loading bug reported in #347

  gpertea

  committed
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Commits on Dec 4, 2021

• Update create_rna_sr.py

  gpertea

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• version bump to 2.2.0

  gpertea

  committed
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Commits on Nov 6, 2021

• Merge pull request #264 from ljyanesm/patch-1

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  gpertea

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• Merge pull request #342 from yollct/pydefaultdict

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  gpertea

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• Update README.md

  gpertea

  authored
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Commits on Nov 5, 2021

• Update README.md

  gpertea

  authored
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• prevent curl failures

  gpertea

  committed
  43b498d

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• prevent curl SSL cert problem

  gpertea

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• merging htslib branch

  gpertea

  committed
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• merging htslib

  gpertea

  committed
  81e38d0

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• tests added

  gpertea

  committed
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• run_tests_valgrind should use existing test_data

  gpertea

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• mix tests added

  gpertea

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• Update README.md

  gpertea

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• Update README.md

  gpertea

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• Update README.md

  gpertea

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Commits on Nov 4, 2021

• Update README.md

  gpertea

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• adjusting usage text

  gpertea

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