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pyproject.toml
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75 lines (69 loc) · 2.09 KB
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[build-system]
requires = ["poetry-core>=2.0"]
build-backend = "poetry.core.masonry.api"
[project]
name = "sequana-lora"
version = "1.1.0"
description = "Run assembler (Canu, Flye, Hifiasm) on a set of long read files"
license = "BSD-3"
repository = "https://github.com/sequana/lora"
readme = "README.rst"
keywords = ["pacbio", "nanopore", "snakemake", "sequana", "assembly"]
classifiers = [
"Development Status :: 5 - Production/Stable",
"Intended Audience :: Education",
"Intended Audience :: End Users/Desktop",
"Intended Audience :: Developers",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: BSD License",
"Operating System :: POSIX :: Linux",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Topic :: Software Development :: Libraries :: Python Modules",
"Topic :: Scientific/Engineering :: Bio-Informatics",
"Topic :: Scientific/Engineering :: Information Analysis",
]
requires-python = ">=3.9,<4.0"
dependencies = [
"sequana-pipetools >=1.3.0",
"sequana-wrappers >=26.3.0",
"pandas >= 2.0.0",
"Jinja2 >=3.1.2",
"click-completion >=0.5.2",
"click >=8.1.7",
"beautifulsoup4",
"bioservices >=1.16.0"
]
[tool.poetry]
packages = [
{ include = "sequana_pipelines" }
]
[project.scripts]
sequana_lora = "sequana_pipelines.lora.main:main"
[tool.poetry.group.dev.dependencies]
ruff = "^0.0.264"
pytest = "^7.0.1"
black = "^23.3.0"
ipython = "^8.0.1"
pytest-mock = "^3.7.0"
pytest-asyncio = "^0.18.1"
snakefmt = "^0.8.4"
[tool.ruff]
select = [
"E", # pycodestyle errors
"W", # pycodestyle warnings
"F", # pyflakes
"I", # isort
"C", # flake8-comprehensions
"B", # flake8-bugbear
]
ignore = [
"E501", # line too long, handled by black
"B008", # do not perform function calls in argument defaults
"C901", # too complex
]
line-length = 120
[tool.pytest.ini_options]
asyncio_mode = "strict"