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README.md

2D

Example 1, 2 and 3 - the images were taken as is or modified from the Example Human cells .

The images of human cells were provided by Jason Moffat. Moffat J, Grueneberg DA, Yang X, Kim SY, Kloepfer AM, Hinkle G, Piqani B, Eisenhaure TM, Luo B, Grenier JK, Carpenter AE, Foo SY, Stewart SA, Stockwell BR, Hacohen N, Hahn WC, Lander ES, Sabatini DM, Root DE (2006) A lentiviral RNAi library for human and mouse genes applied to an arrayed viral high-content screen. Cell, 124(6):1283-98 / doi: 10.1016/j.cell.2006.01.040. PMID 16564017. The images in this example are licensed as CC-0.

Example 4 - the image of blood cells infected by malaria and stained with Giemsa reagent were taken from set BBBC041v1, available from the Broad Bioimage Benchmark Collection BBBC.

Matching images

Example 1 - the images used are from the Example Human C-N translocation.

The images were taken from image set BBBC014v1 provided by Ilya Ravkin, available from the Broad Bioimage Benchmark Collection BBBC.

Example 2 - the images used are from the Example Yeast colony classification.

Bray, Mark-Anthony et al. “Using CellProfiler for Automatic Identification and Measurement of Biological Objects in Images.” Current protocols in molecular biology vol. 109 14.17.1-14.17.13. 5 Jan. 2015, doi:10.1002/0471142727.mb1417s109.

Groups module

Example 1 and 2 - the images were taken from Example Object tracking.

Foe VE, Field CM, Odell GM. Microtubules and mitotic cycle phase modulate spatiotemporal distributions of F-actin and myosin II in Drosophila syncytial blastoderm embryos. Development. 2000 May;127(9):1767-87. PMID: 10751167.

3D

Example 1 - the images were taken from the pilot data of the JUMP-CP-pilots dataset which will be publicly available November 2022.

Example 2 - the images were provided by Phillip Newmark as part of an image analysis collaboration.

Melanie Issigonis, Akshada B. Redkar, Tania Rozario, Umair W. Khan, Rosa Mejia-Sanchez, Sylvain W. Lapan, Peter W. Reddien, Phillip A. Newmark bioRxiv 2021.11.08.467675.