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Commits on Nov 13, 2025

• reverted a049f69 for a proper fix

  gpertea

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Commits on Nov 11, 2025

• bump version to 3.0.3

  gpertea

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  1dd07a2

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• fix a rare crash when reads are not grouped as expected

  gpertea

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  0f7eaa9

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• likely fix for a --mix crash in #465

  gpertea

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  a049f69

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Commits on Nov 10, 2025

• prevent guide tx output duplication in `-e` mode

  gpertea

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• fixed duplicate guides printing in mergeMode (#493)

  gpertea

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Commits on Oct 9, 2025

• fix: -e sometimes losing track of 0-cov tx; may fix #238, #434, #451, #484

  gpertea

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• Merge pull request #492 from gpertea/longr_polyA_mod_infloop-fix

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  gpertea

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• updated tests for v3.0.2 polyA changes, changed test data repo

  gpertea

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Commits on Oct 5, 2025

• long read infinite loop fix for Ida`s patch

  gpertea

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Commits on Sep 27, 2025

• Poly verbose v2 (#4)

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  ishinder

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Commits on Sep 24, 2025

• Feature/tts poly a graph (#3)

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  ishinder

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Commits on Aug 22, 2025

• restored debug/dev comment blocks

  gpertea

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  7f6ad6d

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Commits on Aug 11, 2025

• fix tests directory creation

  gpertea

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Commits on Aug 10, 2025

• nt

  gpertea

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• clean-up old code, adding self-contained source package

  gpertea

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Commits on Aug 9, 2025

• Merge pull request #478 from noncodo/fix-singlethr-validation

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  gpertea

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Commits on Jul 27, 2025

• Fix: correct validation for -s (singlethr) parameter

  

  Martin Smith

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Commits on Jul 18, 2025

• GFF parsing warning language

  gpertea

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Commits on Jun 5, 2025

• Merge pull request #472 from gpertea/update-readme-is

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• add detailed “Nascent-aware assembly” section

  ishinder

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• Update tests/README.md to show all 9 tests

  gpertea

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Commits on Apr 27, 2025

• prevent printing of nascents in -e -N mode (#470)

  gpertea

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• partial fix for #253, but -e -N still prints nascents though it should not

  gpertea

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  3284b40

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Commits on Mar 17, 2025

• updated htslib to upstream 1.21 to support newer CRAM files as input

  gpertea

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• ..except version.h

  gpertea

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• adding new htscodecs files

  gpertea

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• adding htslib/os for lzma

  gpertea

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  cfd704d

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• upgrading htslib to 1.21

  gpertea

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Commits on Jan 7, 2025

• Update usage message in README.md

  gpertea

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• updated README about the new test data file

  gpertea

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Commits on Jan 6, 2025

• fix libdeflate issues with older g++

  gpertea

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• merged v3.0.0 changes

  gpertea

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Commits on Aug 21, 2024

• fixed xz fetch url, using github url for stable release v5.4.7

  gpertea

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Commits on May 6, 2024

• backport LR fix from dev-2.2.3

  gpertea

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