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<!doctype html>
<html>
<head>
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="chrome=1">
<title>VCFtools</title>
<link rel="stylesheet" href="stylesheets/styles.css">
<link rel="stylesheet" href="stylesheets/github-light.css">
<script src="javascripts/scale.fix.js"></script>
<meta name="viewport" content="width=device-width, initial-scale=1, user-scalable=no">
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<script src="//html5shiv.googlecode.com/svn/trunk/html5.js"></script>
<![endif]-->
</head>
<body>
<div class="wrapper">
<header>
<h1 class="header">VCFtools</h1>
<p class="header">A set of tools written in Perl and C++ for working with VCF files.</p>
<ul>
<li><a href="index.html">Home</a></li>
<li><a href="examples.html">Documentation</a></li>
<li class="download"><a class="buttons" href="https://github.com/vcftools/vcftools/zipball/master">Download ZIP</a></li>
<li class="download"><a class="buttons" href="https://github.com/vcftools/vcftools/tarball/master">Download TAR</a></li>
<li><a class="buttons github" href="https://github.com/vcftools/vcftools">View On GitHub</a></li>
</ul>
</header>
<section>
<h2>Useful Links</h2>
<p>
<ul>
<li><a href="http://www.1000genomes.org/">1000 Genomes Project main page</a></li>
<li><a href="http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit">The Genome Analysis Toolkit</a> - The GATK Java package from the Broad includes a number of routines for generating and manipulating VCF file.</li>
<li><a href="http://www.htslib.org/" >HTSlib</a> - a toolset that can generate VCF files from SAM or BAM format files</li>
<li><a href="http://sourceforge.net/projects/samtools/files/tabix/">Tabix</a> - an indexing tool that is required for certain features in the PERL API.</li>
<li><a href="https://github.com/ekg/vcflib">vcflib</a> - A simple C++ library for parsing and manipulating VCF files from Erik Garrison. </a></li>
<li><a href="https://github.com/indapa/VcfPythonUtils">VcfPythonUtils</a> - Some Python utilities to work with VCF from Amit Indap. </a></li>
<li><a href="https://github.com/AlistairNWard/vcfCTools">vcfCTools</a> - C++ implementation of vcfPytools from Alistair Ward.
</ul>
</p>
</section>
<footer>
<p><small>Hosted on <a href="https://pages.github.com">GitHub Pages</a></small></p>
<p>Copyright 2015 © VCFtools</p>
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