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<!doctype html>
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<title>VCFtools</title>
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<h1 class="header">VCFtools</h1>
<p class="header">A set of tools written in Perl and C++ for working with VCF files.</p>
<ul>
<li><a href="index.html">Home</a></li>
<li><a href="examples.html">Documentation</a></li>
<li class="download"><a class="buttons" href="https://github.com/vcftools/vcftools/zipball/master">Download ZIP</a></li>
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<section>
<h2>VCF (Variant Call Format) specifications</h2>
<!--
<p>The <strong>newer</strong> versions of the VCF v4.1, VCF v4.2, and BCF v2.1 specification documents can be found on <a href="https://github.com/samtools/hts-specs">github</a>. The <strong>older</strong> versions of the documents are hosted on the 1000 genomes wiki page.
<ul>
<li>VCF format v4.0: <a href="http://www.1000genomes.org/wiki/Analysis/Variant%20Call%20Format/vcf-variant-call-format-version-40">1000 genomes wiki</a></li>
<li>VCF format v4.1: <a href="http://www.1000genomes.org/wiki/Analysis/Variant%20Call%20Format/vcf-variant-call-format-version-41">1000 genomes wiki</a> | <a href="http://samtools.github.io/hts-specs/VCFv4.1.pdf">github</a> </li>
<li>VCF format v4.2: <a href="http://www.1000genomes.org/wiki/analysis/variant-call-format/vcf-variant-call-format-version-42">1000 genomes wiki</a> | <a href="http://samtools.github.io/hts-specs/VCFv4.2.pdf">github</a> </li>
<li>BCF format v2.1: <a href="http://www.1000genomes.org/wiki/analysis/variant-call-format/bcf-binary-vcf-version-2">1000 genomes wiki</a> | <a href="http://samtools.github.io/hts-specs/BCFv2_qref.pdf">github</a></li>
</ul></p>
<p><a href="https://lists.sourceforge.net/lists/listinfo/vcftools-spec">VCFtools-spec</a> is a low traffic mailing list intended for VCF format related discussions, such as clarifications of the current format version or proposals of changes to the specification.</p>
</section>-->
<p>The VCF specification is now maintained by <a href="http://ga4gh.org/#/fileformats-team">Global Alliance for Genomics and Health Data Working group file format team</a>. <br>
<br>
The main version of the VCF specification can be found on <a href="https://github.com/samtools/hts-specs">github</a>. <br>
<br>
A PDF of the (current) v4.2 spec can be found <a href="http://samtools.github.io/hts-specs/VCFv4.2.pdf">here</a>.<br>A PDF of the (older) v4.1 spec is available <a href="http://samtools.github.io/hts-specs/VCFv4.1.pdf">here</a>.
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<p>Copyright 2015 © VCFtools</p>
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