Package: imageFeatureTCGA

Title: Import features from hovernet, provgigapath into a MultiAssayExperiment

Version: 0.99.69

Authors@R: c(

person("Marcel", "Ramos", , "[email protected]", "aut",

c(ORCID = "0000-0002-3242-0582", affiliation =

"CUNY Graduate School of Public Health and Health Policy,

New York, NY USA")

),

person("Ilaria", "Billato", , "[email protected]",

c("aut", "cre"), c(ORCID = "0000-0002-3335-3254",

affiliation = "Department of Biology, University of Padova")

),

person("Eslam", "Abousamra", role = "aut", comment = c(

affiliation = "CUNY Graduate School of Public Health and Health Policy,

New York, NY USA")

),

person("Sehyun", "Oh", , "[email protected]", "aut",

c(ORCID = "0000-0002-9490-3061", affiliation =

"CUNY Graduate School of Public Health and Health Policy,

New York, NY USA")

))

Description: The package imports data from HoverNet, and ProvGigaPath

pipelines. Pipeline output data are hosted in a self-owned online

repository. Package functionality conveniently incorporates pipeline data

into existing MultiAssayExperiment instances from curatedTCGAData.

Depends: R (>= 4.5.0)

Imports:

BiocBaseUtils,

BiocFileCache,

BiocIO,

BumpyMatrix,

dplyr,

httr2,

IRanges,

methods,

readr,

rjsoncons,

S4Vectors,

SingleCellExperiment,

SpatialExperiment,

SummarizedExperiment,

TCGAutils,

TENxIO,

tibble,

utils

Suggests:

AnnotationDbi,

anndataR,

BiocStyle,

BiocParallel,

cowplot,

curatedTCGAData,

curl,

ggplot2,

imageTCGAutils,

knitr,

png,

RColorBrewer,

rhdf5,

rmarkdown,

SpatialFeatureExperiment,

tinytest,

yaml

VignetteBuilder: knitr

biocViews: Software, Infrastructure, DataImport, DataRepresentation

BugReports: https://github.com/waldronlab/imageFeatureTCGA/issues

URL: https://github.com/waldronlab/imageFeatureTCGA

License: Artistic-2.0

Encoding: UTF-8

Roxygen: list(markdown = TRUE)

RoxygenNote: 7.3.3

Date: 2026-03-19