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| 1 | +#!/bin/bash |
| 2 | + |
| 3 | +usage="Usage: run-clara -y yamlfile [-i dirorfile] [-o dir] [-t threads] [-n nevents] [-c CLARA_HOME]" |
| 4 | + |
| 5 | +function error() { |
| 6 | + echo -e "\n$usage\n\nERROR: $@" && exit 1 |
| 7 | +} |
| 8 | + |
| 9 | +function abspath() { |
| 10 | + [ -d $1 ] && echo $(cd $1 && pwd) && return 0 |
| 11 | + [ -f $1 ] && echo $(cd $(dirname $1) && pwd)/$1 && return 0 |
| 12 | + return 1 |
| 13 | +} |
| 14 | + |
| 15 | +ulimit -u 49152 >& /dev/null |
| 16 | +set -e |
| 17 | + |
| 18 | +# Check user options: |
| 19 | +input=. |
| 20 | +output=. |
| 21 | +threads=2 |
| 22 | +while getopts i:o:y:t:n:c:h opt |
| 23 | +do |
| 24 | + case $opt in |
| 25 | + i) input=$OPTARG ;; |
| 26 | + o) output=$OPTARG ;; |
| 27 | + y) yaml=$OPTARG ;; |
| 28 | + t) threads=$OPTARG ;; |
| 29 | + n) nevents="-e $OPTARG" ;; |
| 30 | + c) CLARA_HOME=$OPTARG ;; |
| 31 | + h) echo $usage && exit 0 ;; |
| 32 | + ?) error "Unknown option: $1" ;; |
| 33 | + esac |
| 34 | +done |
| 35 | +[ -z ${CLARA_HOME+x} ] && error "CLARA_HOME must be specified." |
| 36 | +[ -d $CLARA_HOME ] || error "CLARA_HOME is missing: $CLARA_HOME" |
| 37 | +[ -z ${yaml+x} ] && error "-y YAML must be specified." |
| 38 | +[ -r $yaml ] || error "YAML file does not exist." |
| 39 | +[ $threads -eq 0 ] && threads=`grep -c ^processor /proc/cpuinfo` |
| 40 | + |
| 41 | +# Normalize all user paths: |
| 42 | +export CLARA_HOME=$(abspath $CLARA_HOME) |
| 43 | +input=$(abspath $input) |
| 44 | +output=$(abspath $output) |
| 45 | +yaml=$(abspath $yaml) |
| 46 | + |
| 47 | +# Set the environment variables and directories required by CLARA: |
| 48 | +unset CLARA_MONITOR_FE |
| 49 | +export CLARA_USER_DATA=$(mktemp -d $output/run-clara.tmp.XXXXXX) |
| 50 | +cd $CLARA_USER_DATA |
| 51 | +mkdir -p $CLARA_USER_DATA/log |
| 52 | +mkdir -p $CLARA_USER_DATA/config |
| 53 | +mkdir -p $CLARA_USER_DATA/data/output |
| 54 | + |
| 55 | +# Generate the required file containing a file list for CLARA: |
| 56 | +# (Note, that file list must contain relative paths, not absolute.) |
| 57 | +test -e $input || eror "Invalid inputs: $input" |
| 58 | +test -d $input && find $input -maxdepth 1 -type f -name '*.hipo' -exec basename {} \; > filelist.txt |
| 59 | +test -f $input && echo $(basename $input) > filelist.txt |
| 60 | +[ $(cat filelist.txt | wc -l) -gt 0 ] || error "Found no input files." |
| 61 | + |
| 62 | +# Finally, run CLARA: |
| 63 | +$CLARA_HOME/lib/clara/run-clara \ |
| 64 | + -i $input \ |
| 65 | + -o $CLARA_USER_DATA \ |
| 66 | + -z rec_ \ |
| 67 | + -x $CLARA_USER_DATA/log \ |
| 68 | + -t $threads \ |
| 69 | + $nevents \ |
| 70 | + -s recon \ |
| 71 | + $yaml \ |
| 72 | + ./filelist.txt |
| 73 | + |
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