fixed dumb crash in GTF parsing

gpertea · gpertea · commit e3f924fc10f4 · 2017-01-27T10:31:14.000-05:00
diff --git a/gclib/gff.cpp b/gclib/gff.cpp
@@ -371,7 +371,7 @@ GffLine::GffLine(GffReader* reader, const char* l): _parents(NULL), _parents_len
 				reader->gtf_transcript=true;
 				is_gtf_transcript=1;
 				if (reader->gtf_gene &&
-					 gene_id!=NULL && strcmp(Parent,gene_id)!=0) {
+					 gene_id!=NULL && strcmp(ID,gene_id)!=0) {
 				          Parent=Gstrdup(gene_id);
 				}
 			 }
diff --git a/stringtie.cpp b/stringtie.cpp
@@ -11,7 +11,7 @@
 #include "proc_mem.h"
 #endif
 
-#define VERSION "1.3.2b"
+#define VERSION "1.3.2c"
 
 //#define DEBUGPRINT 1
 
@@ -876,7 +876,7 @@ void processOptions(GArgs& args) {
 	 fast=!(args.getOpt('Z')!=NULL);
 	 verbose=(args.getOpt('v')!=NULL);
 	 if (verbose) {
-	     fprintf(stderr, "Command line was:\n");
+	     fprintf(stderr, "Running StringTie " VERSION ". Command line:\n");
 	     args.printCmdLine(stderr);
 	 }
 	 //complete=!(args.getOpt('i')!=NULL);

Original file line number	Diff line number	Diff line change
`@@ -371,7 +371,7 @@ GffLine::GffLine(GffReader* reader, const char* l): _parents(NULL), _parents_len`
`371`	`371`	`reader->gtf_transcript=true;`
`372`	`372`	`is_gtf_transcript=1;`
`373`	`373`	`if (reader->gtf_gene &&`
`374`		`- gene_id!=NULL && strcmp(Parent,gene_id)!=0) {`
	`374`	`+ gene_id!=NULL && strcmp(ID,gene_id)!=0) {`
`375`	`375`	`Parent=Gstrdup(gene_id);`
`376`	`376`	`}`
`377`	`377`	`}`