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Commits on Jan 10, 2019

• gclib code sync update

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Commits on Dec 16, 2018

• added a couple convenience methods to GIntHash

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Commits on Nov 2, 2018

• README simplified

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• README updated

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  dfad155

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• sync gclib code

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Commits on Oct 1, 2018

• added GFastaIndex as needed

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Commits on Sep 29, 2018

• make GBamRecord::spliceStrand() recognize minimap2's ts tag if XS is missing

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Commits on Sep 4, 2018

• basic XS inference for ref-overlapping alns

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Commits on Aug 29, 2018

• set default -M back to 1.0; version bumped to 1.3.5

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Commits on Jul 19, 2018

• added clipL, clipR soft-clipping values to GBamRecord

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Commits on Jul 13, 2018

• removed unnecessary echo command in Makefile

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  079180e

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• more MacOS gdb fixes

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  7b27c4a

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Commits on Jul 6, 2018

• a few changes for the MacOS build

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  32ff6db

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Commits on Jun 26, 2018

• Makefile adjustments (for #185)

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  45a4f59

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Commits on Jun 6, 2018

• fix minor comment typo

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  55a97e0

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Commits on Apr 9, 2018

• safer GTF vs GFF3 recognition; GStr fixes

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Commits on Feb 25, 2018

• Makefile warn confuses eclipse CDT builder

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  e5d850c

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Commits on Feb 21, 2018

• update python version requirement (2.7)

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  9772f0b

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Commits on Feb 20, 2018

• minor Makefile edit

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  1b1ea00

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• adjusted Makefile; more -v logging info per bundle

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Commits on Feb 15, 2018

• new version tag due to horrible GStr bug

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  2584c14

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• fix terrible typo in GStr::appendmem()

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Commits on Feb 2, 2018

• bump version to 1.3.4beta due to more GFF parsing changes

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  173f0a7

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• added GffReader::gene2exon, not used by stringtie

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  783149e

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• a few more minor performance tweaks

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  7578030

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• more GTF/GFF parsing fixes and workarounds

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Commits on Feb 1, 2018

• allow BED4 format; include explicit start/stop codons in CDS

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Commits on Dec 14, 2017

• removed unused function

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  eea2f54

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• a couple of comments added about the consumer-producer model employed

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Commits on Oct 26, 2017

• more stringent recognition of transcripts (only exon-based entities are loaded)

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  ecd2e7d

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Commits on Oct 25, 2017

• sync gclib updates

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  6ea88d3

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• updated prepDE with some usability changes

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Commits on Aug 25, 2017

• enforce signed char (issue #138)

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Commits on Jul 12, 2017

• Merge pull request #128 from nsoranzo/patch-1

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• Merge pull request #133 from razsultana/patch-1

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