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TorkelE
commented
Feb 7, 2026
| # solve as ODEs | ||
| odesys = ode_model(rs) | ||
| odesys = complete(odesys) | ||
| oprob = ODEProblem(odesys, u₀map, tspan, parammap) |
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Going through odesys here didn't feel necessary in the context of the FAW, so dropped it so that we don't have to change syntax
TorkelE
commented
Feb 7, 2026
| - [`continuous_events`](@ref events): Allows the creation of continuous events. | ||
| - [`discrete_events`](@ref events): Allows the creation of discrete events. | ||
| - `brownians`: Allows the creation of brownian processes that can be used to add noise to non-species variables. | ||
| - `poissonians`: Allows the creation of poissonian processes that can be used to add jump events to non-species variables. |
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need to remember to add links here once appropriate docs are up. Might be able to at least write a small section on each taht we can expand later on.
TorkelE
commented
Feb 7, 2026
| can call: | ||
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| * `ModelingToolkitBase.unknowns(rn)` returns all species *and variables* across the | ||
| system, *all sub-systems*, and all constraint systems. Species are ordered |
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We no longer have these, right?
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Yes, no constraint systems since ReactionSystem can be anything now.
TorkelE
commented
Feb 7, 2026
| It is possible to turn off all inference (requiring all symbols to be declared using `@parameters`, `@species`, `@variables`, or some other option) through the [`@require_declaration` option](@ref faq_require_declaration). | ||
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| ## [How can I turn off automatic inferring of species and parameters when using the DSL?](@id faq_require_declaration) | ||
| This option can be set using the `@require_declaration` option inside `@reaction_network`. In this case all the species, parameters, and variables in the system must be pre-declared using one of the `@species`, `@parameters`, or `@variables` macros. For more information about what is inferred automatically and not, please see the section on [`@require_declaration`](@ref dsl_advanced_options_require_dec). |
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The FAW file has on section on conservation laws, but it is to late in the eveningfor me wanting to have a look at that.
isaacsas
approved these changes
Feb 8, 2026
isaacsas
approved these changes
Feb 8, 2026
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