Welcome to the scilpy documentation!
scilpy is a comprehensive library that provides tools and scripts for processing, analyzing, and visualizing diffusion MRI and tractography data. It supports advanced features such as tensor- and multi-tensor modeling, streamline registration/transformations, bundle analysis, and more. Use scilpy to build custom diffusion pipelines or apply ready-to-use scripts. The documentation is organized into the following sections:
Getting started & installation — how to install, set up environments, and run a basic example
Modules & API reference — detailed descriptions of classes functions and modules
Scripts & workflows — ready scripts for common tasks
Getting started
Documentation & Tutorials
- 1. Manipulating volumes
- 2. Reconstructing the local model
- 3. Performing tractography
- 4. Tractogram manipulations
- 5. Bundle segmentation and analysis (tractometry, profilometry)
- 6. Connectivity
- – From raw data to a complete project –
- – Visualization –
- – Useful utilitary scripts –
- – Reproducing scilpy paper figures –