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set_pointer_supersede.py
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107 lines (87 loc) · 2.98 KB
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#!/usr/bin/env python
# Set supersede info on a pointer
import json
import os
import aws_session_assume
import fire
from nrlf.core.dynamodb.model import DocumentPointer
from nrlf.core.logger import logger
from nrlf.producer.fhir.r4.model import (
DocumentReference,
DocumentReferenceRelatesTo,
Identifier,
Reference,
)
logger.setLevel("ERROR")
SKIP_PROD_WARNING = os.getenv("SKIP_PROD_WARNING", "false")
def _set_pointer_supersede_info(
pointer_id: str,
supersede_pointer_id: str,
delete_superseded: bool = False,
env: str = "dev",
table_name: str | None = None,
):
if env == "prod" and SKIP_PROD_WARNING != "true":
confirmation = input(
"\nWARNING - This command will modify the PROD environment. Continue? [y/n] "
)
if confirmation != "y":
return "Exiting at user request"
session = aws_session_assume.get_boto_session(env)
dynamodb = session.resource("dynamodb")
if not table_name:
table_name = f"nhsd-nrlf--{env}-pointers-table"
table = dynamodb.Table(table_name)
print(
f"Setting pointer {pointer_id} in {table_name} to supersede {supersede_pointer_id}...."
)
try:
doc_key = f"D#{pointer_id}"
print(f"Getting {pointer_id}...")
result = table.get_item(
Key={"pk": doc_key, "sk": doc_key},
)
except Exception as e:
print(f"Unable to get pointer. Error: {e}")
return
if "Item" not in result:
print(f"Unable to set superseded info. Pointer {pointer_id} not found.")
return
item = result["Item"]
try:
pointer = DocumentPointer.model_validate({"_from_dynamo": True, **item})
doc_ref = DocumentReference.model_validate_json(pointer.document)
except Exception as e:
print(f"Could not validate pointer from table. Error: {e}")
return
if not doc_ref.relatesTo:
doc_ref.relatesTo = []
existing_supersedes = [
relates_to for relates_to in doc_ref.relatesTo if relates_to.code == "replaces"
]
if existing_supersedes:
print(
f"Unable to add supersede info as pointer is already superseding a pointer: {existing_supersedes}"
)
return
doc_ref.relatesTo.append(
DocumentReferenceRelatesTo(
code="replaces",
target=Reference(
type="DocumentReference",
identifier=Identifier(value=supersede_pointer_id),
),
)
)
print(f"Adding supersede info to {pointer_id}...")
updated_pointer = DocumentPointer.from_document_reference(doc_ref)
table.put_item(
Item=updated_pointer.dict(exclude_none=True, exclude={"_from_dynamo"})
)
if delete_superseded:
print(f"Deleting superseded {supersede_pointer_id}...")
table.delete_item(
Key={"pk": f"D#{supersede_pointer_id}", "sk": f"D#{supersede_pointer_id}"}
)
if __name__ == "__main__":
fire.Fire(_set_pointer_supersede_info)