A simple script to calculate Total Bases, Q20 bases, Q30 bases, Mean Read Length of a fastq file (only unzipped fastq or fq)
perl Q20_Q30_Stats_wo_functions.pl <fastq_file_name>time perl Q20_Q30_Stats_wo_functions.pl test.fq | column -t
fastq_file Total_Reads Total_Bases Total_Q20_Bases Total_Q30_Bases Mean_ReadLen
test.fq 5 750 736 707 150
A perl script to find the connected components. Data Should look like and should be delimted by tab and passed from a file:
Simon John
Simon Paul
Steve Simon
Graham Dave
Dave Jason
Paul Simon
Peter Derek
perl ClustrPairs_v3.pl <pairsFile.list>-----Cluster:1-------
John
Simon
Paul
Steve
-----Cluster:2-------
Jason
Dave
Graham
-----Cluster:3-------
Peter
Derek
- arrangeCol2row.pl
- intersect_lists.pl readme.md
- replaceAmbigousBases2N.pl
- skipOverlappingIntervals3.pl
- splitFiles_incrementally.pl
- uniq_Intersection_elements.pl