Package: compact

Title: compact

Version: 0.0.3

Authors@R: c(

person("Sam", "Morabito", , "[email protected]", role = c("aut", "cre"),

comment = c(ORCID = "0000-0002-7768-4856")),

person("Zechuan", "Shi", , "[email protected]", role = c("aut"),

comment = c(ORCID = "0000-0002-2844-5816")),

person("Swarup Lab", role = "fnd")

)

Description: compact | Co-expression Module Perturbation Analysis in Cellular Transcriptomes.

License: GNU GPLv3

Encoding: UTF-8

Roxygen: list(markdown = TRUE)

RoxygenNote: 7.3.3

URL: https://smorabit.github.io/COMPACT/

Suggests: testthat (>= 3.0.0)

Config/testthat/edition: 3

Depends:

R (>= 4.0.0),

Seurat (>= 4.0.0)

Imports:

Matrix,

VGAM,

pscl,

xgboost (>= 1.7.11.1),

SHAPforxgboost (>= 0.1.3),

ggplot2,

data.table,

ggrastr,

pbapply,

patchwork,

rdist,

reshape2,

rlang,

S4Vectors,

energy,

Rcpp

LinkingTo:

Rcpp,

RcppArmadillo