Folding@Home, Help speed up scientific research on curing COVID-19🦠

IndigoWizard — Wed, 18 Mar 2020 19:50:09 +0000

Staying home and ... do what?

Millions of people around the world follow govt's and WHO prevention guidelines such as staying at home so as not to act as a transmission factor which conveys the corona virus that cause COVID-19.

So, if you follow the containment procedure or by self-awareness, some of you may want to help in a more practical way (or got bored and don't know what to do). Here is one way you can really help speed up scientific research on COVID-19 in order to develop potential drug targets and design new therapeutic opportunities.

Folding @ Home Project !

Stanford University’s Folding@home project is seeking volunteers to help researchers develop treatment therapies for the novel corona virus.

Folding @ Home is a Standford University's distributed computing project that works as a crowdsourced computer network for massive calculations, which means it relies on volunteers users CPUs/GPUs calculation power on a global network.

Researchers are working on developing cures for COVID-19 and this goes by first understanding the protein structure of the potential drug target for COVID-19.

How does this project help?

As proteins help fighting disease by folding, there are many possibilities for folding structures of a single protein, so in order to find the right structure researchers run simulations based on immense calculations. These calculations are broken into "work units" that are passed to individual computers like ours, as gamers or simple PC user all over the world to help accelerate the process!

Okay my gaming machine is ready to report for duty (and my 5 yo laptop too...) How to do this?

Super quick guide:

Go to Folding @ Home
Download and install F@H on your machine (there are versions for different OS)
Launch the client
That's it, start folding and save the world!!

You can already start folding, anonymously or with a user ID, by yourself or in a team!
The more points a team earns, the closer researchers come to finding cures.

Join us at team Micro Club USTHB: 241540

Micro Club USTHB is a non profit organization and a scientific students club at the University of Science and Technology Houari Boumediène, Algeria.

Need a step by step guide? I gotcha!

Install F@H software



Step 1: Lunch the installer.exe and run the setup	Step 2: Chose Express or Advanced (more options)	Step 3: Lunch F@H

Client setup

Desktop client:



l - Desktop interface: Dashboard displaying basic informations like
- Folding speed - The work Unit you are folding (Research project) - Active ID currently using the client

2 - Configuration - ID config
- You can Fold anonymously or setup a User Name - You can fold alone or join a team by setting the teams ID number. Join our Student Scientific Club Team Micro Club USTHB: 241540 - A Passkey helps you make you User ID unique even if someone else uses same user name in order to gain bonus points as you fold!

3 - CPU/GPU config
- By default all values are setup to -1 so the client chooses automatically. - I set my GPU = 1 to use my AMD R7 M445 GPU instead of Intel HD Graphics 620 which index = 0. - Set a positive value on calculation library depending on your GPU: AMD (OpenCL) or NVIDIA (CUDA).

4 - Research Subject Config
- Cause Preference lets you chose the research project you want to contribute to, leave it at "Any" in order to work on COVID-19 Cases. - Tweak the Folding core priority depending on your PC and needs. - Setup a power condition (useful on laptops) to stop the client if your machine is running on battery.

It is possible to visualize the protein molecular structure of the current work unit tour PC is processing but clicking on the icon labeled "Viewer".

You can also access the client through the Task Bar, which will give you the basic functions to run the software quickly.

Web client:

F@H software is a desktop client but it can also be accessed through web browser!

The interface is pretty self explanatory, it presents a compact version of the desktop client all in one.

You can Set or change your user & team ID.
You can check information about earner points and your team.
Setup Folding Power and client run mod (Always / When idle).
You can check information about the project you are contributing to currently.
IMPORTANT! Always leave the research tab set to "Any disease" category as COVID-19 related research work units flow through that thread since it doesn't have a dedicated tab. (different research work units will flow to your client, and so will COVID-19 related ones.)

More info

Get a Passkey to start earning bonus point as you fold.
Join a team to be more efficient.
If you're running F@H on your laptop while using it, it is suggested that you set Folding Power to Light.
If you're running F@H on your gaming tower and want to go full max Folding Power, optimize your client and PC configuration. Always keep an eye on your hardware if starts heating up or things slow down.
You can set the client to fold only when you're PC is idle and you're not using it.

Just think of it, you are contributing to scientific research on crucial projects even when you're doing nothing, how great is that!!

Here's a list of the project related to COVID-19, all flow through the "Any" category of research projects in the F@H software:

14530/14531: Coronavirus SARS-CoV-2 (COVID-19 causing virus) protease - potential drug target.
14328 - Coronavirus SARS-CoV-2 (COVID-19 causing virus) protease - potential drug target
11741: Coronavirus SARS-CoV-2 (COVID-19 causing virus) receptor binding domain in complex with human receptor ACE2.
11746: Coronavirus SARS-CoV-2 (COVID-19 causing virus) receptor binding domain in complex with human receptor ACE2 (alternative structure to 11741).
11742: Coronavirus SARS-CoV-2 (COVID-19 causing virus) protease in complex with an inhibitor.
11743: Coronavirus SARS-CoV-2 (COVID-19 causing virus) protease – potential drug target.
11744: Coronavirus SARS-CoV (SARS causing virus) receptor binding domain trapped by a SARS-CoV S230 antibody.
11745: Coronavirus SARS-CoV (SARS causing virus) receptor binding domain mutated to the SARS-CoV-2 (COVID-19 causing virus) trapped by a SARS-CoV S230 antibody.

List provided by pedro19 on r/pcmasterrace official subreddit.

Sources and useful links

Fold @ Home Project official website

Folding @ Home on Wikipedia

Coronavirus – What we’re doing and how you can help in simple terms

Folding@home takes up the fight against COVID-19 / 2019-nCoV

Folding@home update on SARS-CoV-2 (10 Mar 2020)

F@H Teams & general statisitics

Micro Club

A flexible and durable strategy for archiving open source projects.

IndigoWizard — Sun, 02 Feb 2020 20:03:50 +0000

A couple of hours only left to save your code to future generation!

By the time this article is published, less than 2 hours are left for the first snapshot.

Today, February 2nd 2020 at midnight GitHub will capture a snapshot of the existing state of all active public repositories of its platform in order to preserve them in the Arctic Code Vault in Svalbard, Norway.

What's the GitHub Arctic Code Vault?

Just like Svalbard Global Seed Vault, where a wide variety of plant seeds from all over the world are stored and preserved in the remote Arctic Svalbard archipelago (1300 Km from North Pole), GitHub initiated a similar project in order to store and preserve open source projects in its Arctic Code Vault for future generations to the next 1000 years!

The open source projects will be stored on silver halide film reel with data encoded on 8.8 million pixels/frame with a 1000 years lifespan durability!

GitHub Arctic Code Vault

How do you get your project stored in the arctic archive?

Every public open source project on GitHub that is active will be archived, if you're pushing commits to your projects between the date of announcement at the GitHub Universe [November 13th, 2019 and today, February 2nd, 2020] and if your repo has got between 1 to 250 stars, it will be included in the 02/02/2020 snapshot and stored in the archive of the Arctic Code Vault!

Make sure your repos are stared and push one last commit to ensure it gets archived!

Check out my little pokédex project on GitHub and give it a star or contribute to it, I appreciate it!

IndigoWizard / Pokedex

A Pokédex as a long term project for my web dev training !

Pokédex Project

(Feel free to Star the project, fork it and or contribute to it)

This is my web dev project as a long term running project while i'm learning web dev from 0 to hero! Check the project's web page here: Pokédex

NES.css

This project uses NES-style CSS Framework. NES.css is a NES-style (8bit-like) CSS Framework created by B.C.Rikko. you can the project's page here NES.css - GH-Page OR check the project's github repo directly here NES.css - GitHub repo

View on GitHub

(ps: my first article to DEV.to)

For more information, you can visit the links bellow:

GitHub: https://github.com
GitHub Archive Program: https://archiveprogram.github.com
Piql film: https://www.piql.com/wp-content/uploads/What-we-do-behind-the-scenes.pdf

DEV Community: IndigoWizard