Welcome to EnteroBase

Your advanced tool for exploring the genomic epidemiology of pathogens.
EnteroBase assembles, analyses, and interprets bacterial genomes to provide insights for researchers, epidemiologists, and healthcare professionals.

EnteroBase currently contains 1,711,885 bacterial strains
senterica Image

Salmonella

Total strains: 753,490

Assemblies in progress: 86

Schemes: rMLST, Achtman 7 Gene MLST, cgMLST V2 + HierCC V1, wgMLST
ecoli Image

Escherichia/Shigella

Total strains: 438,197

Assemblies in progress: 20

Schemes: rMLST, wgMLST, Achtman 7 Gene MLST, cgMLST V1 + HierCC V1
mycobacterium Image

Mycobacterium tuberculosis

Total strains: 210,731

Schemes: cgMLST + HierCC, cgMLST V2 + HierCC
streptococcus Image

Streptococcus

Total strains: 169,932

Assemblies in progress: 14

Schemes: cgMLSTv1
enterococcus Image

Enterococcus

Total strains: 54,373

Assemblies in progress:

Schemes: cgMLST E.faecalis + HierCC, cgMLST-ENT2 + HierCC, cgMLST E.faecium + HierCC
clostridium Image

Clostridioides

Total strains: 33,448

Assemblies in progress: 0

Schemes: wgMLST, rMLST, cgMLST V1 + HierCC V1
vibrio Image

Vibrio

Total strains: 23,838

Assemblies in progress: 0

Schemes: rMLST, Vibrio cgMLST + HierCC
yersinia Image

Yersinia

Total strains: 12,589

Assemblies in progress: 1

Schemes: rMLST, wgMLST, Achtman 7 Gene, McNally 7 Gene, cgMLST V1 + HierCC V1
helicobacter Image

Helicobacter

Total strains: 12,475

Assemblies in progress: 0

Schemes: rMLST
mcatarrhalis Image

Moraxella

Total strains: 2,812

Assemblies in progress: 0

Schemes: rMLST, Achtman 7 Gene