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Arc Research Institute

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  1. evo2 evo2 Public

    Genome modeling and design across all domains of life

    Jupyter Notebook 3.5k 402

  2. state state Public

    State is a machine learning model that predicts cellular perturbation response across diverse contexts

    Python 541 148

  3. arc-virtual-cell-atlas arc-virtual-cell-atlas Public

    Arc Virtual Cell Atlas

    Jupyter Notebook 500 50

  4. SRAgent SRAgent Public

    LLM agents for working with the SRA and associated bioinformatics databases.

    Python 160 32

  5. xsra xsra Public

    An efficient CLI to extract sequences from the SRA

    Rust 123 11

  6. cell-eval cell-eval Public

    Comprehensive suite for evaluating perturbation prediction models

    Python 122 45

Repositories

Showing 10 of 33 repositories
  • stack Public

    Stack is a single-cell foundation model that enables in-context learning at inference time.

    ArcInstitute/stack’s past year of commit activity
    Jupyter Notebook 105 15 1 0 Updated Mar 16, 2026
  • Wizards-Staff Public

    Calcium imaging analysis pipeline of outputs from Lizard-Wizard for the Arc Institute.

    ArcInstitute/Wizards-Staff’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 10, 2026
  • Lizard-Wizard Public

    Calcium imaging analysis Nextflow pipeline for the Arc Institute

    ArcInstitute/Lizard-Wizard’s past year of commit activity
    Python 3 MIT 0 0 0 Updated Mar 10, 2026
  • cell-load Public

    pytorch dataloaders for single-cell perturbation data

    ArcInstitute/cell-load’s past year of commit activity
    Python 43 MIT 24 12 4 Updated Mar 8, 2026
  • ScreenPro2 Public

    Flexible analysis of high-content CRISPR screening

    ArcInstitute/ScreenPro2’s past year of commit activity
    Python 32 7 11 (1 issue needs help) 0 Updated Mar 6, 2026
  • evo2 Public

    Genome modeling and design across all domains of life

    ArcInstitute/evo2’s past year of commit activity
    Jupyter Notebook 3,480 Apache-2.0 402 46 1 Updated Mar 4, 2026
  • xsra Public

    An efficient CLI to extract sequences from the SRA

    ArcInstitute/xsra’s past year of commit activity
    Rust 123 11 8 0 Updated Mar 4, 2026
  • cyto Public

    A mapper for 10x-flex single cell sequencing reads with fixed abstract geometries

    ArcInstitute/cyto’s past year of commit activity
    Rust 41 BSD-3-Clause 2 14 0 Updated Mar 3, 2026
  • bqtools Public

    A command line utilty for working with BINSEQ files

    ArcInstitute/bqtools’s past year of commit activity
    Rust 36 3 7 0 Updated Feb 28, 2026
  • MULTI-evolve Public Forked from VincentQTran/MULTI-evolve

    MULTI-evolve: a machine learning-guided end-to-end framework for engineering hyperactive multi-mutant proteins

    ArcInstitute/MULTI-evolve’s past year of commit activity
    Python 50 Apache-2.0 19 0 0 Updated Feb 27, 2026

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