tag:github.com,2008:https://github.com/Bioconductor/BiocManager/releases 2025-11-13T20:05:20Z tag:github.com,2008:Repository/33965307/v1.30.27 2025-11-14T17:23:50Z <h2>CHANGES IN VERSION 1.30.27</h2> <p>MINOR CHANGES</p> <div class="snippet-clipboard-content notranslate position-relative overflow-auto" data-snippet-clipboard-copy-content="o Integrate changes to unit tests with testthat version 3.3.0 (@hadley, #202)"><pre class="notranslate"><code>o Integrate changes to unit tests with testthat version 3.3.0 (@hadley, #202) </code></pre></div> <h2>What's Changed</h2> <ul> <li>Fix for testthat 3.3.0 by <a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/hadley/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/hadley">@hadley</a> in <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="3618293509" data-permission-text="Title is private" data-url="https://github.com/Bioconductor/BiocManager/issues/202" data-hovercard-type="pull_request" data-hovercard-url="/Bioconductor/BiocManager/pull/202/hovercard" href="https://github.com/Bioconductor/BiocManager/pull/202">#202</a></li> </ul> <h2>New Contributors</h2> <ul> <li><a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/hadley/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/hadley">@hadley</a> made their first contribution in <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="3618293509" data-permission-text="Title is private" data-url="https://github.com/Bioconductor/BiocManager/issues/202" data-hovercard-type="pull_request" data-hovercard-url="/Bioconductor/BiocManager/pull/202/hovercard" href="https://github.com/Bioconductor/BiocManager/pull/202">#202</a></li> </ul> <p><strong>Full Changelog</strong>: <a class="commit-link" href="https://github.com/Bioconductor/BiocManager/compare/v1.30.26...v1.30.27"><tt>v1.30.26...v1.30.27</tt></a></p> LiNk-NY tag:github.com,2008:Repository/33965307/v1.30.26 2025-06-05T21:25:16Z <h2>CHANGES IN VERSION 1.30.26</h2> <p>MINOR CHANGES</p> <div class="snippet-clipboard-content notranslate position-relative overflow-auto" data-snippet-clipboard-copy-content="o Remove mention of biocLite script and remove `.LEGACY_INSTALL_CMD` (@sneumann, #195) o Explain management of multiple Bioconductor versions when using the same R version in the vignette o Use `BIOCONDUCTOR_NAME` environment variable for binary URL resolution (@almahmoud, #199) o Use `download.file` to obtain the `config.yaml` file before running `readLines` (@glin, #198)"><pre class="notranslate"><code>o Remove mention of biocLite script and remove `.LEGACY_INSTALL_CMD` (@sneumann, #195) o Explain management of multiple Bioconductor versions when using the same R version in the vignette o Use `BIOCONDUCTOR_NAME` environment variable for binary URL resolution (@almahmoud, #199) o Use `download.file` to obtain the `config.yaml` file before running `readLines` (@glin, #198) </code></pre></div> <p><strong>Full Changelog</strong>: <a class="commit-link" href="https://github.com/Bioconductor/BiocManager/compare/v1.30.25...v1.30.26"><tt>v1.30.25...v1.30.26</tt></a></p> LiNk-NY tag:github.com,2008:Repository/33965307/v1.30.25 2024-08-28T14:15:43Z <h2>CHANGES IN VERSION 1.30.25</h2> <p>MINOR CHANGES</p> <div class="snippet-clipboard-content notranslate position-relative overflow-auto" data-snippet-clipboard-copy-content="o Maintainer email change."><pre class="notranslate"><code>o Maintainer email change. </code></pre></div> <p><strong>Full Changelog</strong>: <a class="commit-link" href="https://github.com/Bioconductor/BiocManager/compare/v1.30.24...v1.30.25"><tt>v1.30.24...v1.30.25</tt></a></p> LiNk-NY tag:github.com,2008:Repository/33965307/v1.30.24 2024-08-27T21:29:39Z <h2>CHANGES IN VERSION 1.30.24</h2> <p>NEW FEATURES</p> <div class="snippet-clipboard-content notranslate position-relative overflow-auto" data-snippet-clipboard-copy-content="o Force BiocManager to use unsupported version of R with `R_BIOC_VERSION` environment variable (@mtmorgan, #193)"><pre class="notranslate"><code>o Force BiocManager to use unsupported version of R with `R_BIOC_VERSION` environment variable (@mtmorgan, #193) </code></pre></div> <p><strong>Full Changelog</strong>: <a class="commit-link" href="https://github.com/Bioconductor/BiocManager/compare/v1.30.23...v1.30.24"><tt>v1.30.23...v1.30.24</tt></a></p> LiNk-NY tag:github.com,2008:Repository/33965307/v1.30.23 2024-05-03T17:28:14Z <h2>CHANGES IN VERSION 1.30.23</h2> <p>NEW FEATURES</p> <div class="snippet-clipboard-content notranslate position-relative overflow-auto" data-snippet-clipboard-copy-content="o Ensure compatibility with `package_version` changes in R 4.4.0 (@kurthornik)"><pre class="notranslate"><code>o Ensure compatibility with `package_version` changes in R 4.4.0 (@kurthornik) </code></pre></div> <p>MINOR CHANGES</p> <div class="snippet-clipboard-content notranslate position-relative overflow-auto" data-snippet-clipboard-copy-content="o Added &quot;Updating old packages&quot; and &quot;Archived CRAN packages&quot; sections in the vignette o Use `BiocStyle` formatting in the vignette o Update Posit links in the vignette"><pre class="notranslate"><code>o Added "Updating old packages" and "Archived CRAN packages" sections in the vignette o Use `BiocStyle` formatting in the vignette o Update Posit links in the vignette </code></pre></div> LiNk-NY tag:github.com,2008:Repository/33965307/v1.30.22 2024-03-06T19:14:01Z <h2>CHANGES IN VERSION 1.30.22</h2> <p>NEW FEATURES</p> <div class="snippet-clipboard-content notranslate position-relative overflow-auto" data-snippet-clipboard-copy-content="o Enable site_repository environment variable or option for install, valid"><pre class="notranslate"><code>o Enable site_repository environment variable or option for install, valid </code></pre></div> <p>MINOR CHANGES</p> <div class="snippet-clipboard-content notranslate position-relative overflow-auto" data-snippet-clipboard-copy-content="o Ensure character input to package_version function (@kurthornik)"><pre class="notranslate"><code>o Ensure character input to package_version function (@kurthornik) </code></pre></div> LiNk-NY tag:github.com,2008:Repository/33965307/v1.30.21 2023-06-09T23:11:03Z <h2>CHANGES IN VERSION 1.30.21</h2> <p>NEW FEATURES</p> <div class="snippet-clipboard-content notranslate position-relative overflow-auto" data-snippet-clipboard-copy-content="o Enable the use of the Bioc-devel branch on R-devel during the 'summer' release cycle (@mtmorgan, #166) o Allow `BIOCMANAGER_SITE_REPOSITORY` environment variable and `BiocManager.site_repository` option as a more permanent option for `site_repository` users (@LiNk-NY). o Support for &quot;time machine&quot; CRAN installations has moved to BiocArchive and has been removed from the package (#151, @LiNk-NY)"><pre class="notranslate"><code>o Enable the use of the Bioc-devel branch on R-devel during the 'summer' release cycle (@mtmorgan, #166) o Allow `BIOCMANAGER_SITE_REPOSITORY` environment variable and `BiocManager.site_repository` option as a more permanent option for `site_repository` users (@LiNk-NY). o Support for "time machine" CRAN installations has moved to BiocArchive and has been removed from the package (#151, @LiNk-NY) </code></pre></div> <p>MINOR CHANGES</p> <div class="snippet-clipboard-content notranslate position-relative overflow-auto" data-snippet-clipboard-copy-content="o Correct links on help pages. See &lt;https://github.com/Bioconductor/BiocManager/pull/160&gt;; thanks @aitap o Additional documentation provided for offline use of BiocManager in `?install` and in the main vignette (#165, @mtmorgan). "><pre class="notranslate"><code>o Correct links on help pages. See &lt;https://github.com/Bioconductor/BiocManager/pull/160&gt;; thanks @aitap o Additional documentation provided for offline use of BiocManager in `?install` and in the main vignette (#165, @mtmorgan). </code></pre></div> LiNk-NY tag:github.com,2008:Repository/33965307/v1.30.20 2023-02-23T23:51:26Z <h2>CHANGES IN VERSION 1.30.20</h2> <p>NEW FEATURES</p> <div class="snippet-clipboard-content notranslate position-relative overflow-auto" data-snippet-clipboard-copy-content="o Add `BIOCMANAGER_CHECK_REPOSITORIES` environment variable for non-interactive sessions as an alternative to the `BiocManager.check_repositories` option (#144, @HenrikBengtsson)"><pre class="notranslate"><code>o Add `BIOCMANAGER_CHECK_REPOSITORIES` environment variable for non-interactive sessions as an alternative to the `BiocManager.check_repositories` option (#144, @HenrikBengtsson) </code></pre></div> <p>MINOR CHANGES</p> <div class="snippet-clipboard-content notranslate position-relative overflow-auto" data-snippet-clipboard-copy-content="o Re-use and translate `update` and `ask` arguments when installing via `install_github` (#126, @Jiefei-Wang) o Allow `type` argument during package installation to opt out of binary installations (#103, @lshep) o Check `BiocVersion` installation with `system.file` rather than with `packageVersion` (K. Hornik)"><pre class="notranslate"><code>o Re-use and translate `update` and `ask` arguments when installing via `install_github` (#126, @Jiefei-Wang) o Allow `type` argument during package installation to opt out of binary installations (#103, @lshep) o Check `BiocVersion` installation with `system.file` rather than with `packageVersion` (K. Hornik) </code></pre></div> LiNk-NY tag:github.com,2008:Repository/33965307/v1.30.19 2022-10-27T17:53:46Z <h2>CHANGES IN VERSION 1.30.19</h2> <p>MINOR CHANGES</p> <div class="snippet-clipboard-content notranslate position-relative overflow-auto" data-snippet-clipboard-copy-content="o Updated warning message for clarity when packages are installed of the same version or greater. o The `ask` argument is passed through to the `remotes::install_github` o Update unit tests which did not include the full scenario of options o Catch zero length outputs when timeouts occur (#140, @hpages)"><pre class="notranslate"><code>o Updated warning message for clarity when packages are installed of the same version or greater. o The `ask` argument is passed through to the `remotes::install_github` o Update unit tests which did not include the full scenario of options o Catch zero length outputs when timeouts occur (#140, @hpages) </code></pre></div> LiNk-NY tag:github.com,2008:Repository/33965307/v1.30.18 2022-10-25T17:49:28Z <h2>CHANGES IN VERSION 1.30.18</h2> <p>MINOR CHANGES</p> <div class="snippet-clipboard-content notranslate position-relative overflow-auto" data-snippet-clipboard-copy-content="o Increase robustness of code when loading and working with the version map o Add internal checks to version tags in map and update unit tests o Include a 'troubleshooting' section in the vignette"><pre class="notranslate"><code>o Increase robustness of code when loading and working with the version map o Add internal checks to version tags in map and update unit tests o Include a 'troubleshooting' section in the vignette </code></pre></div> LiNk-NY