tag:github.com,2008:https://github.com/EvolBioInf/andi/releases 2026-02-15T10:17:23Z tag:github.com,2008:Repository/20397277/v1.15 2026-02-15T10:27:32Z <p>After more than ten years we are finally incrementing the major version to 1. However, I'm keeping the minor, so this is release 1.15.</p> <p>Changes:</p> <ul> <li>added an option to output ANI as evolutionary distance</li> </ul> kloetzl tag:github.com,2008:Repository/20397277/v0.14 2021-11-28T13:50:45Z <p>This is a maintenance release of andi. Changes include</p> <ul> <li>New <code>logdet</code> evolutionary model. Thanks to <a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/blueraleigh/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/blueraleigh">@blueraleigh</a></li> <li>Fixed parsing error on fasta lines starting with <code>-</code>.</li> <li>Enabled compilation with pre-C11 compilers.</li> <li>Internal simplifications.</li> </ul> kloetzl tag:github.com,2008:Repository/20397277/v0.13 2020-02-11T14:26:37Z <p>This is a maintenance release. Changes include</p> <ul> <li>slightly improved performance</li> <li>rare bugs fixed</li> <li>faster file parsing</li> <li>better anchor threshold</li> <li>removal of psufsort, libdivsufsort is now mandatory</li> <li>fixed unit tests</li> </ul> kloetzl tag:github.com,2008:Repository/20397277/v0.12 2018-03-26T12:06:54Z <p>This release comes with a few changes to 0.11:</p> <ul> <li>implemented <a href="https://github.com/EvolBioInf/andi/commit/40c1799d7221fa35061f575fd33964eb90b75349">lucky anchors</a> leading to a 10-15% speedup</li> <li>added progress indicator</li> <li>improved error messages</li> <li>corrected math</li> <li>various minor changes</li> </ul> <p><em>Update 2018-03-26:</em> Note that the unit tests may fail when executed in parallel. So please avoid that. 😅</p> kloetzl tag:github.com,2008:Repository/20397277/v0.11 2017-07-12T10:51:21Z <p>Besides minor improvements the changes include:</p> <ul> <li>new --file-of-filenames parameter</li> <li>new --truncate-names behaviour</li> <li>fixed anchor length computation</li> <li>zsh autocompletion (not yet installed)</li> </ul> kloetzl tag:github.com,2008:Repository/20397277/v0.10 2016-05-09T13:03:33Z <p>This release fixes a serious performance regression. Comparison of the 3085 S. Pneumoniae given in the paper now takes 4h and 59 min. Furthermore, warnings and errors were improved with all messages now being documented in the manual.</p> kloetzl tag:github.com,2008:Repository/20397277/v0.9.6.2 2016-02-13T16:47:52Z <p>This minor release fixes two issues on OS X:</p> <ul> <li>added missing header</li> <li>ignores <code>__declspec</code> from divsufsort headers</li> <li>TravisCI now also builds on OS X</li> </ul> <p>Thanks to <a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/tseemann/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/tseemann">@tseemann</a> for reporting.</p> kloetzl tag:github.com,2008:Repository/20397277/v0.9.6.1 2016-02-05T16:41:39Z <p>Due to my stupidity v0.9.6 printed <code>nan</code> instead of zeros on the main diagonal of bootstrapped matrices. This is now fixed.</p> kloetzl tag:github.com,2008:Repository/20397277/v0.9.6 2016-02-04T15:12:01Z <p>This release fixes the double JC correction and adds the Kimura two-parameter model. This can now be activate via the <code>--model</code> switch. Additionally, the unit tests are now reproducible.</p> kloetzl tag:github.com,2008:Repository/20397277/v0.9.5 2016-01-13T15:35:14Z <p><strong>BUG: This version applies the JC correction twice.</strong></p> <p>This release adds pairwise bootstrapping to compute support values. Other changes include</p> <ul> <li>fixed two underflows</li> <li>fixed undefined behaviour</li> <li>improved warnings</li> <li>better input parsing</li> <li>better tests</li> <li>better docs with less typos</li> </ul> kloetzl