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@Hekstra-Lab

Hekstra Lab

GitHub of the Hekstra Lab. Note: Careless and Reciprocal Spaceship have migrated to https://github.com/rs-station

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  1. phase-retrieval phase-retrieval Public

    A small library implementing phase retrieval algorithms for 2D images.

    Jupyter Notebook 29 10

  2. SFcalculator SFcalculator Public

    21 1

  3. colav colav Public

    Calculate protein structural representations (dihedral angles, CA pairwise distances, and strain analysis) for downstream analysis (e.g., PCA, t-SNE, or UMAP).

    Jupyter Notebook 9 1

  4. mdtools mdtools Public

    Tools for running MD simulations in OpenMM

    Python 6 3

  5. scientific-python-bootcamp scientific-python-bootcamp Public

    Notebooks from a three day introduction to scientific computing in python at Harvard University.

    Jupyter Notebook 3 3

  6. EF-X-crystal-MD EF-X-crystal-MD Public

    Setup and analysis of MD simulations mimicking the application of an external electric field to a protein crystal.

    Jupyter Notebook 3 1

Repositories

Showing 10 of 45 repositories
  • integrator Public

    Proof of concept profile fitting and integration with neural nets

    Hekstra-Lab/integrator’s past year of commit activity
    HTML 3 0 0 0 Updated Mar 19, 2026
  • scramble Public

    A tool for disambiguating serial laue data

    Hekstra-Lab/scramble’s past year of commit activity
    Python 1 MIT 0 1 1 Updated Mar 12, 2026
  • raman-analysis Public

    Spontaneous Raman analysis library

    Hekstra-Lab/raman-analysis’s past year of commit activity
    Python 1 1 2 4 Updated Mar 2, 2026
  • yeast-mrcnn Public

    Another implementation of mask-rcnn for detecting budding yeast cells in microscopy images

    Hekstra-Lab/yeast-mrcnn’s past year of commit activity
    Python 0 MIT 0 3 1 Updated Jan 5, 2026
  • Hekstra-Lab/napari-labeller’s past year of commit activity
    Python 2 BSD-3-Clause 0 1 1 Updated Jan 5, 2026
  • microutil Public

    Python utils for working microscopy datasets

    Hekstra-Lab/microutil’s past year of commit activity
    Python 2 BSD-3-Clause 2 7 1 Updated Jan 5, 2026
  • fast-overlap Public

    meep meep

    Hekstra-Lab/fast-overlap’s past year of commit activity
    Python 0 2 2 1 Updated Jan 5, 2026
  • valdo Public
    Hekstra-Lab/valdo’s past year of commit activity
    Jupyter Notebook 1 MIT 0 14 2 Updated Dec 30, 2025
  • panel_mapper Public

    Map predicted reflection centroids to corresponding detector panel

    Hekstra-Lab/panel_mapper’s past year of commit activity
    Python 0 0 0 0 Updated Sep 12, 2025
  • dw Public

    jupyter notebooks exploring the double-Wilson model

    Hekstra-Lab/dw’s past year of commit activity
    Jupyter Notebook 0 MIT 1 0 0 Updated Sep 12, 2025