Skip to content
@LieberInstitute

Lieber Institute for Brain Development

Popular repositories Loading

  1. spatialLIBD spatialLIBD Public

    Code for the spatialLIBD R/Bioconductor package and shiny app

    R 111 22

  2. HumanPilot HumanPilot Public

    Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project

    HTML 93 30

  3. recount3 recount3 Public

    Explore and download data from the recount3 project

    R 38 5

  4. spatialDLPFC spatialDLPFC Public

    spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples

    HTML 30 5

  5. 10xPilot_snRNAseq-human 10xPilot_snRNAseq-human Public

    10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC

    HTML 25 10

  6. dotdotdot dotdotdot Public

    Example vignette for dotdotdot software

    MATLAB 18 12

Repositories

Showing 10 of 130 repositories
  • spatialDLPFC_SCZ Public

    Visium-IF/RNAscope-IF project looking at spatial gene expression in the context of perineuronal nets in DLPFC of neurotypical control donors and donors with a diagnosis of schizophrenia

    LieberInstitute/spatialDLPFC_SCZ’s past year of commit activity
    HTML 1 0 16 0 Updated Mar 16, 2026
  • LFF_spatial_ERC Public

    LFF_spatial_ERC

    LieberInstitute/LFF_spatial_ERC’s past year of commit activity
    HTML 1 MIT 0 0 0 Updated Mar 13, 2026
  • Posit_Connect_shiny_apps Public

    Code for Posit Connect R shiny apps (spatialLIBD, iSEE, ...)

    LieberInstitute/Posit_Connect_shiny_apps’s past year of commit activity
    HTML 0 0 0 0 Updated Mar 13, 2026
  • DeconvoBuddies Public

    Helper Functions for LIBD Deconvolution

    LieberInstitute/DeconvoBuddies’s past year of commit activity
    R 7 Artistic-2.0 3 6 0 Updated Mar 5, 2026
  • globus Public

    LIBD Globus Share Endpoints

    LieberInstitute/globus’s past year of commit activity
    HTML 0 1 0 0 Updated Mar 2, 2026
  • LFF_spatial_LC Public

    LFF project, spatial_LC data analysis

    LieberInstitute/LFF_spatial_LC’s past year of commit activity
    HTML 0 0 0 0 Updated Feb 26, 2026
  • spatialdACC Public

    spatialdACC project

    LieberInstitute/spatialdACC’s past year of commit activity
    HTML 0 0 0 0 Updated Feb 25, 2026
  • spatial_NAc Public

    Paired snRNA-seq/Visium for human NAc

    LieberInstitute/spatial_NAc’s past year of commit activity
    HTML 0 0 1 0 Updated Feb 24, 2026
  • spatial_HYP Public
    LieberInstitute/spatial_HYP’s past year of commit activity
    HTML 1 0 0 0 Updated Feb 16, 2026
  • Habenula_Pilot Public

    habenulaPilot project code repository

    LieberInstitute/Habenula_Pilot’s past year of commit activity
    HTML 0 1 0 0 Updated Jan 27, 2026

Most used topics

Loading…