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v2.0.0#15

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casperdcl merged 181 commits intomasterfrom
dev2
Jan 5, 2021
Merged

v2.0.0#15
casperdcl merged 181 commits intomasterfrom
dev2

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@casperdcl casperdcl commented Feb 7, 2020

  • drop py2 compatibility
    • setup.py
      • classifiers
      • python_requires
    • syntax
    • document
  • fix conda install
  • fix logging
  • fix dependency versions
    • nibabel>=2.4.0 (was >=2.2.1, <=2.3.1)
  • tidy logging
    • sort out Cnt['VERBOSE']
    • linearise logic if verbose: log.info -> log.debug
    • replace log.error(...); sys.exit() -> raise
  • fix errors
  • test
  • use ninst as with NIMPA (os.platform/resources/cmake/cuda etc handling)
  • don't crash when re-running a reconstruction that was previously done with python2 (i.e. pre-existing niftyout/mumap-hdw)
    • migrated to npz from npy so no conflicts anyway here
  • depends on v2.0.0 NIMPA#4
  • fixes Is NIPET python3 compatible yet? #14
  • fixes export HMUDIR not respected #17
  • fixes No module named dinf #18

pjmark and others added 24 commits January 13, 2020 20:20
… and then keeping them in synch with the sct.h
…efinitions of LM properites to scnner specific file from def.h
@casperdcl casperdcl force-pushed the dev2 branch 2 times, most recently from e04370a to c933cd8 Compare January 5, 2021 00:09
@casperdcl casperdcl marked this pull request as ready for review January 5, 2021 02:59
@casperdcl casperdcl merged commit d27b3d2 into master Jan 5, 2021
@casperdcl casperdcl deleted the dev2 branch January 5, 2021 02:59
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/tag v2.0.0 d27b3d2

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No module named dinf export HMUDIR not respected Is NIPET python3 compatible yet?

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