API packages for easy access to the functionality of the biocentral ecosystem.
- Embedding: Embed protein sequences into a vector space using a protein language model.
- Predict: Predict protein properties using pre-defined prediction models.
- Train: Train your own custom prediction models (using biotrainer)
- Inference: Run inference on new data using your own custom prediction models.
Please cite our paper if you are using the biocentral API in your work:
@Article{Franz2026,
author = {Franz, Sebastian and Olenyi, Tobias and Schloetermann, Paula and Smaoui, Amine and Jimenez-Soto, Luisa F. and Rost, Burkhard},
journal = {Journal of Molecular Biology},
title = {biocentral: embedding-based protein predictions},
year = {2026},
issn = {0022-2836},
month = jan,
pages = {169673},
doi = {10.1016/j.jmb.2026.169673},
groups = {[JMB] biocentral: embedding-based protein predictions, swc_bo_engineering},
publisher = {Elsevier BV},
}