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Apply ruff for linting and formatting#1307

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berquist merged 13 commits intocclib:masterfrom
Anselmoo:Anselmoo/issue1306
Dec 2, 2023
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Apply ruff for linting and formatting#1307
berquist merged 13 commits intocclib:masterfrom
Anselmoo:Anselmoo/issue1306

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@Anselmoo Anselmoo commented Nov 18, 2023 •
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This pull request applies the ruff tool for linting and formatting the codebase. It includes the following commits:

  • chore: 🗑️ Fix formatting and minor issues in code → for Python Files as a preparation commit for the ruff-implementation

  • chore: 🗑️ Fix formatting and minor issues in code → for markdown as a preparation commit for the ruff-implementation

  • chore: 🗑️ Fix formatting and minor issues in code → for test-data as a preparation commit for the ruff-implementation

  • feat: ✨ Introduce ruff for linting

  • chore: ♻️ Apply new pre-commit

  • Apply fix end of files and default ruff

NOTE: Foe this PR MyPy has to be temporary deactivated and then the ruff advanced rule-set activated upon request.

Fixes: #1306

@Anselmoo Anselmoo mentioned this pull request Nov 21, 2023
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@berquist berquist self-requested a review November 26, 2023 18:33
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Anselmoo commented Nov 27, 2023
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@berquist the problem is the end of files-fix, that might be once considered in a new issue. There was some inconsistency in the length of the outputs

@berquist berquist added this to the v1.8.1 milestone Nov 28, 2023
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  1. Can you make the PR starting with the pre-commit config updates that you started and I modified, then run pre-commit again? I fixed the EOF issues: pre-commit must not run on test data, only source code and docs.

  2. I'm not sure if I want to force line endings with pre-commit yet (I'd like to check some things on Windows), but we do need at least a one-time fix for everything that's here. Can you have a commit that fixes line endings separate from the one that runs ruff, then remove [fix, --lf] from the config?

@berquist berquist mentioned this pull request Nov 29, 2023
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Anselmoo commented Nov 30, 2023

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Concerning 1: Sorry, I don't totally get it? Should this PR closed and open a new one with the applied chances? Or just run it locally and resubmit possible chances?

Concerning 2: Will take a look

Anselmoo and others added 12 commits December 2, 2023 00:32
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berquist commented Dec 2, 2023

Sorry, this was confusing. I was asking about also fixing line endings, since we have had a problem with that.

I put back isort because ruff is not doing what I expected, and I think it's because their implementation isn't finished. However now isort has messed up some ordering that I'll need to take a closer look at.

I've reviewed all of the ruff changes and they look good.

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Anselmoo commented Dec 2, 2023

Will take care of the fixing line endings; if required, I will/have to update the test in terms of counting lines. This was formally a problem in that the count of lines was not correct anymore.

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berquist commented Dec 2, 2023

I actually fixed all the line endings already (though it may come up again during PRs if someone tries to check in CRLF for Windows, we'll see).

I apologize for (re)doing lots of things here; we are, in parallel, trying to make other large developer-facing changes and publish a paper for version 2.0 in the next 1-2 months, and this needs to be merged. I tried to keep parts of your commits and add authorship where relevant. Thank you for giving the push to finally get this done.

I've installed pre-commit.ci on the repo but it won't run until the next PR.

@berquist berquist merged commit 2193e9b into cclib:master Dec 2, 2023
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berquist added a commit to berquist/cclib that referenced this pull request Dec 2, 2023
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Ignore revisions from cclib#1307 in git blame
f742e6f
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Anselmoo commented Dec 2, 2023

I actually fixed all the line endings already (though it may come up again during PRs if someone tries to check in CRLF for Windows, we'll see).

I apologize for (re)doing lots of things here; we are, in parallel, trying to make other large developer-facing changes and publish a paper for version 2.0 in the next 1-2 months, and this needs to be merged. I tried to keep parts of your commits and add authorship where relevant. Thank you for giving the push to finally get this done.

I've installed pre-commit.ci on the repo but it won't run until the next PR.

No worries @berquist, if it helps, it helps ... more important keep cclib maintainable.

shivupa added a commit that referenced this pull request Dec 4, 2023
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Merge pull request #1310 from berquist/1122-git-blame-ignore-revs
ceb096c 
Ignore revisions from #1307 in git blame
@berquist berquist mentioned this pull request Dec 26, 2023
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amandadumi pushed a commit to amandadumi/cclib that referenced this pull request Dec 27, 2023
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Ignore revisions from cclib#1307 in git blame
b4f16ba
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Add ruff as universal linter for cclib

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